Mycobacterium phage GUmbie
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Detailed Information for Phage GUmbie
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByTara Togstad
Year Found2010
Location FoundSpokane, WA USA
Finding InstitutionGonzaga University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates47.6679 N, 117.4005 W Map
Discovery NotesDate: 9-3-10
Time: 3:40pm
Location: Gonzaga University campus, near landscaping, flowers, lots of foot traffic
Depth: 4cm
Very moist soil
Temp: 84°F
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 26, 2011
Genome length (bp)57387
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCGGAAGGCGC
GC Content61.4%
Fasta file available?Yes: Download fasta file
Characterization
ClusterF
SubclusterF1
Cluster Life CycleTemperate
Other Cluster Members

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AbbyNormal (None)

Grib (None)

Kishmeesh (None)

KitCat (None)

MightyMorph (None)

Puck (None)

Renaud18 (None)

WIVsmall1220 (None)

Alexphander (F1)

Anaxagorus (F1)

Ant1Dodson (F1)

ArcusAngelus (F1)

Ardmore (F1)

Arienne (F1)

Asmart (F1)

Awesomesauce (F1)

BabytheFifth (F1)

Barson (F1)

Batiatus (F1)

BigPhil (F1)

Bipolar (F1)

BobaPhett (F1)

Bobi (F1)

BodEinwohner17 (F1)

BoomCrackaPop (F1)

Boomer (F1)

Braemar (F1)

Brocalys (F1)

Bubbles123 (F1)

Burwell21 (F1)

BuzzLyseyear (F1)

ByChance (F1)

Byougenkin (F1)

Cabrinians (F1)

Cakepop (F1)

CaptainTrips (F1)

Cerasum (F1)

Che8 (F1)

Chhibber (F1)

Chikondi (F1)

Chuckly (F1)

Clifton (F1)

Clover (F1)

CoolGuy (F1)

Cornucopia (F1)

Daenerys (F1)

Danda (F1)

Dante (F1)

DaWorst (F1)

DCrust15 (F1)

DeadP (F1)

Desmond (F1)

DillTech15 (F1)

DirtMcgirt (F1)

DLane (F1)

Docouto (F1)

Dorothy (F1)

DotProduct (F1)

Drago (F1)

DRBy19 (F1)

Eish (F1)

EleanorGeorge (F1)

Emma (F1)

Empress (F1)

Enby (F1)

Estave1 (F1)

Estella (F1)

Fancypants (F1)

Filuzino (F1)

Firehouse51 (F1)

Flathead (F1)

Florinda (F1)

Frankie (F1)

Freddie4 (F1)

Fruitloop (F1)

FunOne (F1)

Galactic (F1)

Gardregs (F1)

Gendisarray (F1)

Genesis (F1)

Geralt (F1)

Girafales (F1)

Girr (F1)

Gorge (F1)

GreatPumpkin (F1)

GUmbie (F1)

Hades (F1)

Hamulus (F1)

Harley (F1)

Hegedechwinu (F1)

Ibhubesi (F1)

Inventum (F1)

IrishSherpFalk (F1)

James (F1)

Job42 (F1)

JoeyJr (F1)

Judylove (F1)

Kalikimaka (F1)

Katya (F1)

Kenuha5 (F1)

Kersh (F1)

Kimberlium (F1)

KingMidas (F1)

Kingsley (F1)

Koella (F1)

Krakatau (F1)

KristaRAM (F1)

Latretium (F1)

LillyLatzon (F1)

LilMoolah (F1)

Lizziana (F1)

Llama (F1)

Llij (F1)

Lorde (F1)

Lysinator (F1)

MacDrage (F1)

Mahavrat (F1)

Mantra (F1)

Mattes (F1)

McDiddy (F1)

Melissauren88 (F1)

MerrillCO18 (F1)

Mille (F1)

MilleniumForce (F1)

MinionDave (F1)

Minnie (F1)

Misha28 (F1)

MisterCuddles (F1)

Modragons (F1)

Mozy (F1)

Ms6 (F1)

Mutaforma13 (F1)

Myosotis (F1)

Nemain (F1)

Nimbo (F1)

Nitzel (F1)

Nivrat (F1)

Noodle (F1)

NormanBulbieJr (F1)

Ochi17 (F1)

OfUltron (F1)

Ogopogo (F1)

OldBen (F1)

OlympiaSaint (F1)

Ovechkin (F1)

OwlsT2W (F1)

Pacc40 (F1)

Peanut21s (F1)

Phabio (F1)

PHappiness (F1)

Phasih (F1)

Phatniss (F1)

PhrankthaTank (F1)

Piper2020 (F1)

Pippy (F1)

Plackberry (F1)

Plumbus (F1)

PMC (F1)

Poenanya (F1)

Polka14 (F1)

Pollywog (F1)

PopTart (F1)

Priscilla (F1)

Prometheus (F1)

QuickMath (F1)

Quico (F1)

Ramsey (F1)

RitaG (F1)

Rocktrap (F1)

RockyHorror (F1)

Rombolo (F1)

Royals2015 (F1)

Ruby (F1)

S2Kari (F1)

S2TSquared (F1)

Saal (F1)

SaltyMike (F1)

Sandalphon (F1)

SassyB (F1)

Scottish (F1)

Seagreen (F1)

SG4 (F1)

Sharpshooter (F1)

Shauna1 (F1)

SherL (F1)

ShiLan (F1)

SimranZ1 (F1)

SiSi (F1)

Sparkdehlily (F1)

Spartacus (F1)

Spikelee (F1)

Spoonbill (F1)

Strokeseat (F1)

SuperGrey (F1)

SwagPigglett (F1)

Taj (F1)

Taus (F1)

TDanisky (F1)

TonaldTDrump (F1)

TootsiePop (F1)

Tweety (F1)

UncleRicky (F1)

Velveteen (F1)

Wachhund (F1)

Wee (F1)

WheatBerry18 (F1)

Whouxphf (F1)

WillSterrel (F1)

WIVsmall (F1)

XFactor (F1)

Zerg (F1)

Avani (F2)

Che9d (F2)

Demsculpinboyz (F2)

Jabbawokkie (F2)

Yoshi (F2)

Zapner (F2)

Squirty (F3)

TChen (F4)

ThetaBob (F4)

Cornie (F5)

Annotation StatusIn GenBank
Plaque NotesLarge clear plaques
MorphotypeSiphoviridae
Number of Genes103
Has been Phamerated?Yes
Gene List

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GUmbie_1
(terminase small subunit)

GUmbie_2
(terminase large subunit)

GUmbie_3
(portal protein)

GUmbie_4
(capsid maturation protease)

GUmbie_5
(scaffolding protein)

GUmbie_6
(major capsid protein)

GUmbie_7

GUmbie_8

GUmbie_9

GUmbie_10

GUmbie_11
(major tail subunit)

GUmbie_12
(tail assembly chaperone)

GUmbie_13
(tail assembly chaperone)

GUmbie_14
(tapemeasure protein)

GUmbie_15
(minor tail subunit)

GUmbie_16
(minor tail subunit)

GUmbie_17
(minor tail subunit)

GUmbie_18
(minor tail subunit)

GUmbie_19
(D-Ala-D-Ala carboxypeptidase)

GUmbie_20

GUmbie_21

GUmbie_22

GUmbie_23

GUmbie_24

GUmbie_25

GUmbie_26

GUmbie_27

GUmbie_28

GUmbie_29

GUmbie_30
(lysin A)

GUmbie_31
(lysin B)

GUmbie_32
(holin)

GUmbie_33

GUmbie_34

GUmbie_35
(DnaQ-like protein)

GUmbie_36

GUmbie_37

GUmbie_38
(PLA2-like domain protein)

GUmbie_39

GUmbie_40
(HTH DNA binding domain protein)

GUmbie_41
(integrase)

GUmbie_42

GUmbie_43

GUmbie_44
(HTH DNA binding domain protein)

GUmbie_45
(antirepressor)

GUmbie_46

GUmbie_47

GUmbie_48

GUmbie_49

GUmbie_50

GUmbie_51

GUmbie_52

GUmbie_53

GUmbie_54

GUmbie_55
(WhiB)

GUmbie_56

GUmbie_57
(WhiB)

GUmbie_58

GUmbie_59

GUmbie_60

GUmbie_61

GUmbie_62
(AAA ATPase)

GUmbie_63
(HNH endonuclease domain protein)

GUmbie_64
(DNA methylase)

GUmbie_65

GUmbie_66

GUmbie_67

GUmbie_68
(GIY-YIG domain protein)

GUmbie_69

GUmbie_70

GUmbie_71

GUmbie_72

GUmbie_73

GUmbie_74
(MPME2 protein)

GUmbie_75

GUmbie_76

GUmbie_77

GUmbie_78

GUmbie_79

GUmbie_80

GUmbie_81

GUmbie_82

GUmbie_83

GUmbie_84

GUmbie_85

GUmbie_86

GUmbie_87

GUmbie_88

GUmbie_89

GUmbie_90

GUmbie_91

GUmbie_92

GUmbie_93
(MerR-like protein)

GUmbie_94

GUmbie_95

GUmbie_96
(AlpA)

GUmbie_97

GUmbie_98

GUmbie_99

GUmbie_100
(N-acetylgalactosaminyltransferase)

GUmbie_101
(Ser/Thr kinase domain protein)

GUmbie_102

GUmbie_103
(N-acetylglucosaminyltransferase)

GUmbie_104
(HNH endonuclease domain protein)

Publication Info
Uploaded to GenBank?Yes
GenBank AccessionJN398368
Refseq NumberNC_023746
Published in PaperPope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity
Archiving Info
Archiving status Archived
SEA Designator 2010GONZgumbietlt
Pitt Freezer Box# 14
Pitt Freezer Box Grid# 13
Available Files
Plaque PictureDownload
EM PictureDownload
Final DNAMaster FileDownload