Detailed Information for Phage GUmbie |
Discovery Information |
Isolation Host | Mycobacterium smegmatis mc²155 |
Found By | Tara Togstad |
Year Found | 2010 |
Location Found | Spokane, WA USA |
Finding Institution | Gonzaga University |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | Yes |
Isolation Temperature | Not entered |
GPS Coordinates | 47.6679 N, 117.4005 W Map |
Discovery Notes | Date: 9-3-10 Time: 3:40pm Location: Gonzaga University campus, near landscaping, flowers, lots of foot traffic Depth: 4cm Very moist soil Temp: 84°F |
Sequencing Information |
Sequencing Complete? | Yes |
Date Sequencing Completed | Jan 26, 2011 |
Genome length (bp) | 57387 |
Character of genome ends | 3' Sticky Overhang |
Overhang Length | 10 bases |
Overhang Sequence | CGGAAGGCGC |
GC Content | 61.4% |
Fasta file available? | Yes: Download fasta file |
Characterization |
Cluster | F |
Subcluster | F1 |
Cluster Life Cycle | Temperate |
Other Cluster Members |
|
Annotating Institution | Unknown or unassigned |
Annotation Status | In GenBank |
Plaque Notes | Large clear plaques |
Morphotype | Siphoviridae |
Number of Genes | 103 |
Has been Phamerated? | Yes |
Gene List |
|
Publication Info |
Uploaded to GenBank? | Yes |
GenBank Accession | JN398368 |
Refseq Number | NC_023746 |
Published in Paper | Pope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity |
Archiving Info |
Archiving status |
Archived |
SEA Designator |
2010GONZgumbietlt |
Pitt Freezer Box# |
14 |
Pitt Freezer Box Grid# |
13 |
Available Files |
Plaque Picture | Download |
EM Picture | Download |
Final DNAMaster File | Download |