| Detailed Information for Phage Phatniss |
| Discovery Information |
| Isolation Host | Mycobacterium smegmatis mc²155 |
| Found By | Taylor Veralli |
| Year Found | 2013 |
| Location Found | Baltimore, MD USA |
| Finding Institution | Johns Hopkins University |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | Not entered |
| GPS Coordinates | 39.331389 N, 76.619444 W Map |
| Discovery Notes | My phage was obtained from very dry soil near an area with a lot of foot traffic. |
| Naming Notes | Katniss Everdeen is a character from the Hunger Games who had to overcome a lot of fictional adversity. I name my phage in her honor. Also my phage is very active (individual plaques were not visible from streaking, and my HTL was drawn from web plate diluted all the way to 10^-5) so the name, phonetically sounding like "Fat"niss, is also applicable because it enjoys its fair share of bacteria. |
| Sequencing Information |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Feb 21, 2014 |
| Sequencing Facility | Virginia Commonwealth University Nucleic Acids Research Facilities |
| Shotgun Sequencing Method | 454 Pyrosequencing |
| Approximate Shotgun Coverage | 840 |
| Sanger Finishing Reactions | 4 |
| Genome length (bp) | 57293 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 10 bases |
| Overhang Sequence | CGGAAGGCGC |
| GC Content | 61.3% |
| Fasta file available? | Yes: Download fasta file |
| Characterization |
| Cluster | F |
| Subcluster | F1 |
| Cluster Life Cycle | Temperate |
| Other Cluster Members |
|
| Annotating Institution | Unknown or unassigned |
| Annotation Status | In GenBank |
| Plaque Notes | The plagues have the appearance of a "bulls eye." The average size is 3 mm in diameter, but this varies greatly depending on the concentration of phage. At lower concentrations the plagues are around 5mm in diameter, and at the web plate concentrations the diameter of each plaque is around 1-1.5 mm. |
| Morphotype | Siphoviridae |
| Number of Genes | 101 |
| Has been Phamerated? | Yes |
| Gene List |
|
| Submitted Annotation in DNA Master Format | Download |
| Author List | Download |
| Annotation Cover Sheet | Download |
| Publication Info |
| Uploaded to GenBank? | Yes |
| GenBank Accession | KT279576 |
| Refseq Number | None yet |
| Archiving Info |
| Archiving status |
Archived |
| Pitt Freezer Box# |
13 |
| Pitt Freezer Box Grid# |
G2 |
| Available Files |
| Plaque Picture | Download |
| EM Picture | Download |
