Mycobacterium phage RedBird
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Detailed Information for Phage RedBird
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByElouise Jaramillo & Deborah Jacobs-Sera
Year Found2022
Location FoundPittsburgh, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramPhage Hunters Integrating Research and Education
From enriched soil sample?Yes
Isolation Temperature37°C
GPS Coordinates40.514774 N, 80.045234 W Map
Discovery Notesoriginal sample labeled MAD_NN_#3
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedAug 31, 2022
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1725
Genome length (bp)58738
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCGGACGGCGC
GC Content61.5%
Fasta file available?Yes: Download fasta file
Characterization
ClusterF
SubclusterF1
Cluster Life CycleTemperate
Other Cluster Members

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Soul22 (None)

Akhila (F1)

Alexphander (F1)

ArcusAngelus (F1)

Ardmore (F1)

Aubs (F1)

Awesomesauce (F1)

Batiatus (F1)

Beakin (F1)

BigPhil (F1)

Bipolar (F1)

Blexus (F1)

BlueCrab (F1)

BobaPhett (F1)

Bobi (F1)

BodEinwohner17 (F1)

Boomer (F1)

Brocalys (F1)

Bubbles123 (F1)

Burwell21 (F1)

BuzzLyseyear (F1)

ByChance (F1)

Byougenkin (F1)

Cabrinians (F1)

CaptainTrips (F1)

Cerasum (F1)

Che8 (F1)

Chuckly (F1)

Clifton (F1)

Coco12 (F1)

Cornucopia (F1)

DaddyRickover (F1)

Daenerys (F1)

Dante (F1)

DaWorst (F1)

DeadP (F1)

DillTech15 (F1)

DirtMcgirt (F1)

DLane (F1)

Donkeykong (F1)

Doomphist (F1)

Dorothy (F1)

DotProduct (F1)

Doug (F1)

Drago (F1)

DRBy19 (F1)

Eish (F1)

EleanorGeorge (F1)

Emma (F1)

Empress (F1)

Enby (F1)

Eradicator (F1)

Estave1 (F1)

Fancypants (F1)

Filuzino (F1)

Firehouse51 (F1)

Flathead (F1)

Florinda (F1)

Frankie (F1)

Fruitloop (F1)

Galactic (F1)

Gandalph (F1)

Geralt (F1)

GigiOuiOui (F1)

Girafales (F1)

Girr (F1)

Gorge (F1)

GUmbie (F1)

Hades (F1)

Hamulus (F1)

Harley (F1)

Hegedechwinu (F1)

Hlubikazi (F1)

Ibhubesi (F1)

Inventum (F1)

IrishSherpFalk (F1)

JalFarm20 (F1)

James (F1)

Jarcob (F1)

Job42 (F1)

JoeyJr (F1)

Juice456 (F1)

Kenuha5 (F1)

Kersh (F1)

Kimberlium (F1)

KingMidas (F1)

Kingsley (F1)

Koella (F1)

Krakatau (F1)

KristaRAM (F1)

LastJedi (F1)

Latretium (F1)

Leozinho (F1)

Leperchaun (F1)

LilMoolah (F1)

Lizziana (F1)

Llama (F1)

Llij (F1)

Lorde (F1)

Madiba (F1)

MadMen (F1)

Mahavrat (F1)

Mandlovu (F1)

Mantra (F1)

Martik (F1)

Mattes (F1)

Melissauren88 (F1)

MilanaBonita (F1)

MilleniumForce (F1)

MinionDave (F1)

Minnie (F1)

Misha28 (F1)

MisterCuddles (F1)

Modragons (F1)

Moonbeam (F1)

Mova (F1)

Mozy (F1)

Ms6 (F1)

Mutaforma13 (F1)

Nimbo (F1)

Nitzel (F1)

Nivrat (F1)

NormanBulbieJr (F1)

Ochi17 (F1)

OfUltron (F1)

Ogopogo (F1)

OldBen (F1)

OlympiaSaint (F1)

Ovechkin (F1)

OwlsT2W (F1)

Pacc40 (F1)

Phalconet (F1)

Phanphagia (F1)

PHappiness (F1)

Phasih (F1)

Phatniss (F1)

Piper2020 (F1)

Pippy (F1)

Plumbus (F1)

PMC (F1)

Poenanya (F1)

Polka14 (F1)

Pollywog (F1)

PopTart (F1)

Priscilla (F1)

QuickMath (F1)

Quico (F1)

Ramsey (F1)

RedBird (F1)

Rita (F1)

RitaG (F1)

Rockne (F1)

RockyHorror (F1)

Royals2015 (F1)

Ruby (F1)

Saal (F1)

Sabbb (F1)

Sandalphon (F1)

Sarma624 (F1)

Sassafras (F1)

SassyB (F1)

Scottish (F1)

Seabastian (F1)

Seagreen (F1)

SG4 (F1)

Shauna1 (F1)

ShiLan (F1)

SimranZ1 (F1)

SiSi (F1)

Sparkdehlily (F1)

Spartacus (F1)

Spikelee (F1)

Spoonbill (F1)

StAnnes (F1)

Starcevich (F1)

Strokeseat (F1)

SuperGrey (F1)

SwagPigglett (F1)

Taj (F1)

TDanisky (F1)

TootsiePop (F1)

Tootsieroll (F1)

Tweety (F1)

UncleRicky (F1)

Velveteen (F1)

Veteran (F1)

VRedHorse (F1)

Wachhund (F1)

Wee (F1)

Whatsapiecost (F1)

Whouxphf (F1)

WillSterrel (F1)

XFactor (F1)

Yorick (F1)

Zerg (F1)

Zizzle (F1)

Avani (F2)

Che9d (F2)

Demsculpinboyz (F2)

Jabbawokkie (F2)

Yoshi (F2)

Zapner (F2)

Squirty (F3)

Renaud18 (F4)

TChen (F4)

ThetaBob (F4)

Cornie (F5)

Annotating InstitutionUniversity of Pittsburgh
Annotation StatusIn GenBank
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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RedBird_1
(terminase, small subunit)

RedBird_2
(terminase, small subunit)

RedBird_3
(portal protein)

RedBird_4

RedBird_5
(scaffolding protein)

RedBird_6
(major capsid)

RedBird_7
(head to tail adapter)

RedBird_8
(head to tail stopper)

RedBird_9

RedBird_10
(tail terminator)

RedBird_11
(major tail protein)

RedBird_12
(tail assembly chaperone)

RedBird_13
(tail assembly chaperone)

RedBird_14
(tape measure protein)

RedBird_15

RedBird_16
(minor tail protein)

RedBird_17
(minor tail protein)

RedBird_18
(minor tail protein)

RedBird_19
(DADA)

RedBird_20

RedBird_21

RedBird_22

RedBird_23

RedBird_24

RedBird_25

RedBird_26

RedBird_27

RedBird_28

RedBird_29

RedBird_30
(lysin a)

RedBird_31
(lysin b)

RedBird_32

RedBird_33

RedBird_34

RedBird_35
(DNA polymerase)

RedBird_36

RedBird_37

RedBird_38

RedBird_39

RedBird_40
(integrase)

RedBird_41

RedBird_42
(immunity repressor)

RedBird_43
(helix-turn-helix DNA binding domain)

RedBird_44

RedBird_45

RedBird_46

RedBird_47

RedBird_48

RedBird_49

RedBird_50

RedBird_51

RedBird_52

RedBird_53

RedBird_54

RedBird_55
(WhiB family transcription factor)

RedBird_56

RedBird_57
(WhiB family transcription factor)

RedBird_58
(helix-turn-helix DNA binding domain)

RedBird_59

RedBird_60

RedBird_61

RedBird_62
(RecA-like DNA recombinase)

RedBird_63

RedBird_64
(HNH endonuclease)

RedBird_65

RedBird_66

RedBird_67

RedBird_68

RedBird_69
(DnaQ-like (DNA polymerase III subunit))

RedBird_70

RedBird_71
(DNA methyltransferase)

RedBird_72
(DNA methyltransferase)

RedBird_73

RedBird_74

RedBird_75
(DNA methyltransferase)

RedBird_76

RedBird_77

RedBird_78

RedBird_79

RedBird_80

RedBird_81

RedBird_82

RedBird_83

RedBird_84

RedBird_85

RedBird_86

RedBird_87

RedBird_88

RedBird_89

RedBird_90

RedBird_91

RedBird_92

RedBird_93

RedBird_94

RedBird_95

RedBird_96

RedBird_97

RedBird_98

RedBird_99

RedBird_100

RedBird_101

RedBird_102
(galactosyltransferase)

RedBird_103

RedBird_104
(glycosyltransferase)

RedBird_105
(HNH endonuclease)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionOP820468
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 147
Pitt Freezer Box Grid# B9
Available Files
GenBank File for PhameratorDownload