Detailed Information for Phage Oksu |
Discovery Information |
Isolation Host | Mycobacterium smegmatis mc²155 |
Found By | Erica Anderson |
Year Found | 2022 |
Location Found | Ottawa, Canada |
Finding Institution | University of Ottawa |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | No |
Isolation Temperature | 22°C |
GPS Coordinates | 45.401073 N, 75.648655 W Map |
Discovery Notes | This soil sample was collected on September 21st in a flower bed at Roger Guindon Hall. The temperature at the time of isolation was 22 degrees Celsius. |
Naming Notes | This phage is named after Korean corn tea that my mom always used to brew for me when I was young. |
Sequencing Information |
Sequencing Complete? | Yes |
Date Sequencing Completed | Jan 5, 2023 |
Sequencing Facility | Pittsburgh Bacteriophage Institute |
Shotgun Sequencing Method | Illumina |
Approximate Shotgun Coverage | 668 |
Genome length (bp) | 59317 |
Character of genome ends | 3' Sticky Overhang |
Overhang Length | 10 bases |
Overhang Sequence | CCGATGGCAT |
GC Content | 60.9% |
Fasta file available? | Yes: Download fasta file |
Characterization |
Cluster | F |
Subcluster | F1 |
Cluster Life Cycle | Temperate |
Other Cluster Members |
|
Annotating Institution | University of Ottawa |
Annotation Status | Overdue (Expected completion by 8/31/2024) |
Morphotype | Siphoviridae |
Number of Genes | 107 |
Number of tRNAs | 0 |
Number of tmRNAs | 0 |
Has been Phamerated? | Yes |
Gene List |
|
Publication Info |
Uploaded to GenBank? | No |
GenBank Accession | None yet |
Refseq Number | None yet |
Archiving Info |
Archiving status |
Archived |
Pitt Freezer Box# |
154 |
Pitt Freezer Box Grid# |
F5 |
Available Files |
Plaque Picture | Download |
Restriction Digest Picture | Download |
EM Picture | Download |