Detailed Information for Phage DotProduct |
Discovery Information |
Isolation Host | Mycobacterium smegmatis mc²155 |
Found By | Andryus Planutis/Mahathee Chetapalli |
Year Found | 2009 |
Location Found | Irvine, CA USA |
Finding Institution | University of California, San Diego |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | No |
Isolation Temperature | Not entered |
GPS Coordinates | 33.64035 N, 117.83217 W Map |
Discovery Notes | Located UC Irvine Community Gardens. It was a moist compost, well, tended, in bin with ventilation holes. Soil depth was 10cm at 86 degrees. |
Sequencing Information |
Sequencing Complete? | Yes |
Date Sequencing Completed | Mar 17, 2011 |
Sequencing Facility | Joint Genomics Institute |
Genome length (bp) | 55363 |
Character of genome ends | 3' Sticky Overhang |
Overhang Length | 10 bases |
Overhang Sequence | CGGAAGGCGC |
GC Content | 61.8% |
Fasta file available? | Yes: Download fasta file |
Characterization |
Cluster | F |
Subcluster | F1 |
Cluster Life Cycle | Temperate |
Other Cluster Members |
|
Annotating Institution | Unknown or unassigned |
Annotation Status | In GenBank |
Plaque Notes | 4mm diameter/clear dot plaques after 24 hours of incubation, turned into bulls-eye plaques after 24 more hours of incubation ( total incubation 48 hours). at 37 degrees Celsius. |
Morphotype | Siphoviridae |
Number of Genes | 95 |
Has been Phamerated? | Yes |
Gene List |
|
Publication Info |
Uploaded to GenBank? | Yes |
GenBank Accession | JN859129 |
Refseq Number | None yet |
Published in Paper | Pope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity |
Archiving Info |
Archiving status |
Archived |
Pitt Freezer Box# |
1 |
Pitt Freezer Box Grid# |
F8 |
Available Files |
Virtual Digest Picture | Download |
EM Picture | Download |