Mycobacterium phage DirtMcgirt
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Detailed Information for Phage DirtMcgirt
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByJohn Brooker
Year Found2012
Location FoundCharleston, SC USA
Finding InstitutionCollege of Charleston
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates32.782927 N, 79.945389 W Map
Discovery NotesFound in muddy driveway by puddles of recent flood water almost black in color
Naming NotesTo denote contamination of a set of streaks I labeled them as "Dirt Mcgirt". Upon seeing the label, my instructor noted that she liked my phage name. And so it became my phage name.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 31, 2013
Sequencing FacilityVirginia Commonwealth University Nucleic Acids Research Facilities
Shotgun Sequencing Method454 Pyrosequencing
Approximate Shotgun Coverage260
Sanger Finishing Reactions2
Genome length (bp)54396
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCCGATGGCAT
GC Content61.1%
Fasta file available?Yes: Download fasta file
Characterization
ClusterF
SubclusterF1
Cluster Life CycleTemperate
Other Cluster Members

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Soul22 (None)

Akhila (F1)

Alexphander (F1)

ArcusAngelus (F1)

Ardmore (F1)

Awesomesauce (F1)

Batiatus (F1)

BigPhil (F1)

Bipolar (F1)

Blexus (F1)

BobaPhett (F1)

Bobi (F1)

BodEinwohner17 (F1)

Boomer (F1)

Brocalys (F1)

Bubbles123 (F1)

Burwell21 (F1)

BuzzLyseyear (F1)

ByChance (F1)

Byougenkin (F1)

Cabrinians (F1)

CaptainTrips (F1)

Cerasum (F1)

Che8 (F1)

Chuckly (F1)

Clifton (F1)

Coco12 (F1)

Cornucopia (F1)

Daenerys (F1)

Dante (F1)

DaWorst (F1)

DeadP (F1)

DillTech15 (F1)

DirtMcgirt (F1)

DLane (F1)

Donkeykong (F1)

Doomphist (F1)

Dorothy (F1)

DotProduct (F1)

Doug (F1)

Drago (F1)

DRBy19 (F1)

Eish (F1)

EleanorGeorge (F1)

Emma (F1)

Empress (F1)

Enby (F1)

Eradicator (F1)

Estave1 (F1)

Fancypants (F1)

Filuzino (F1)

Firehouse51 (F1)

Flathead (F1)

Florinda (F1)

Frankie (F1)

Fruitloop (F1)

Galactic (F1)

Gandalph (F1)

Geralt (F1)

GigiOuiOui (F1)

Girafales (F1)

Girr (F1)

Gorge (F1)

GUmbie (F1)

Hades (F1)

Hamulus (F1)

Harley (F1)

Hegedechwinu (F1)

Hlubikazi (F1)

Ibhubesi (F1)

Inventum (F1)

IrishSherpFalk (F1)

JalFarm20 (F1)

James (F1)

Job42 (F1)

JoeyJr (F1)

Juice456 (F1)

Kenuha5 (F1)

Kersh (F1)

Kimberlium (F1)

KingMidas (F1)

Kingsley (F1)

Koella (F1)

Krakatau (F1)

KristaRAM (F1)

LastJedi (F1)

Latretium (F1)

Leozinho (F1)

Leperchaun (F1)

LilMoolah (F1)

Lizziana (F1)

Llama (F1)

Llij (F1)

Lorde (F1)

Madiba (F1)

MadMen (F1)

Mahavrat (F1)

Mandlovu (F1)

Mantra (F1)

Martik (F1)

Mattes (F1)

Melissauren88 (F1)

MilanaBonita (F1)

MilleniumForce (F1)

MinionDave (F1)

Minnie (F1)

Misha28 (F1)

MisterCuddles (F1)

Modragons (F1)

Moonbeam (F1)

Mova (F1)

Mozy (F1)

Mutaforma13 (F1)

Nimbo (F1)

Nitzel (F1)

Nivrat (F1)

NormanBulbieJr (F1)

Ochi17 (F1)

OfUltron (F1)

Ogopogo (F1)

OldBen (F1)

OlympiaSaint (F1)

Ovechkin (F1)

OwlsT2W (F1)

Pacc40 (F1)

Phanphagia (F1)

PHappiness (F1)

Phasih (F1)

Phatniss (F1)

Piper2020 (F1)

Pippy (F1)

Plumbus (F1)

PMC (F1)

Poenanya (F1)

Polka14 (F1)

Pollywog (F1)

PopTart (F1)

Priscilla (F1)

QuickMath (F1)

Quico (F1)

Ramsey (F1)

Rita (F1)

RitaG (F1)

RockyHorror (F1)

Royals2015 (F1)

Ruby (F1)

Saal (F1)

Sabbb (F1)

Sandalphon (F1)

Sarma624 (F1)

Sassafras (F1)

SassyB (F1)

Scottish (F1)

Seabastian (F1)

Seagreen (F1)

SG4 (F1)

Shauna1 (F1)

ShiLan (F1)

SimranZ1 (F1)

SiSi (F1)

Sparkdehlily (F1)

Spartacus (F1)

Spikelee (F1)

Spoonbill (F1)

StAnnes (F1)

Strokeseat (F1)

SuperGrey (F1)

SwagPigglett (F1)

Taj (F1)

TDanisky (F1)

TootsiePop (F1)

Tootsieroll (F1)

Tweety (F1)

UncleRicky (F1)

Velveteen (F1)

Veteran (F1)

VRedHorse (F1)

Wachhund (F1)

Wee (F1)

Whatsapiecost (F1)

Whouxphf (F1)

WillSterrel (F1)

XFactor (F1)

Zerg (F1)

Zizzle (F1)

Avani (F2)

Che9d (F2)

Demsculpinboyz (F2)

Jabbawokkie (F2)

Yoshi (F2)

Zapner (F2)

Squirty (F3)

Renaud18 (F4)

TChen (F4)

ThetaBob (F4)

Cornie (F5)

Annotating InstitutionRockland Community College
Annotation StatusIn GenBank
Plaque NotesLytic, 0.5cm plaque diameter.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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DirtMcgirt_1
(HNH endonuclease)

DirtMcgirt_2
(terminase small subunit)

DirtMcgirt_3
(terminase large subunit)

DirtMcgirt_4
(portal protein)

DirtMcgirt_5
(capsid maturation protease)

DirtMcgirt_6
(scaffolding protein)

DirtMcgirt_7
(major capsid protein)

DirtMcgirt_8
(head-to-tail adaptor)

DirtMcgirt_9
(head-to-tail stopper)

DirtMcgirt_10

DirtMcgirt_11
(tail terminator)

DirtMcgirt_12
(major tail protein)

DirtMcgirt_13
(tail assembly chaperone)

DirtMcgirt_14
(tail assembly chaperone)

DirtMcgirt_15
(tape measure protein)

DirtMcgirt_16
(minor tail protein)

DirtMcgirt_17
(minor tail protein)

DirtMcgirt_18
(minor tail protein)

DirtMcgirt_19
(minor tail protein)

DirtMcgirt_20
(minor tail protein)

DirtMcgirt_21

DirtMcgirt_22

DirtMcgirt_23

DirtMcgirt_24

DirtMcgirt_25

DirtMcgirt_26
(helix-turn-helix DNA binding domain protein)

DirtMcgirt_27

DirtMcgirt_28

DirtMcgirt_29

DirtMcgirt_30

DirtMcgirt_31
(lysin A)

DirtMcgirt_32
(lysin B)

DirtMcgirt_33
(holin)

DirtMcgirt_34

DirtMcgirt_35

DirtMcgirt_36
(DnaQ-like DNA polymerase III subunit)

DirtMcgirt_37

DirtMcgirt_38

DirtMcgirt_39

DirtMcgirt_40

DirtMcgirt_41
(tyrosine integrase)

DirtMcgirt_42

DirtMcgirt_43

DirtMcgirt_44
(immunity repressor)

DirtMcgirt_45
(Cro protein)

DirtMcgirt_46
(antirepressor)

DirtMcgirt_47

DirtMcgirt_48

DirtMcgirt_49

DirtMcgirt_50
(excise)

DirtMcgirt_51

DirtMcgirt_52

DirtMcgirt_53

DirtMcgirt_54

DirtMcgirt_55

DirtMcgirt_56
(WhiB family transcription factor)

DirtMcgirt_57
(helix-turn-helix DNA binding domain protein)

DirtMcgirt_58
(WhiB family transcription factor)

DirtMcgirt_59
(helix-turn-helix DNA binding domain protein)

DirtMcgirt_60

DirtMcgirt_61

DirtMcgirt_62

DirtMcgirt_63

DirtMcgirt_64
(HNH endonuclease)

DirtMcgirt_65

DirtMcgirt_66

DirtMcgirt_67

DirtMcgirt_68

DirtMcgirt_69
(PAPS reductase-like domain protein)

DirtMcgirt_70

DirtMcgirt_71
(G-I-Y Y-I-G endonuclease)

DirtMcgirt_72
(helix-turn-helix DNA binding domain protein)

DirtMcgirt_73

DirtMcgirt_74

DirtMcgirt_75

DirtMcgirt_76

DirtMcgirt_77

DirtMcgirt_78

DirtMcgirt_79

DirtMcgirt_80

DirtMcgirt_81

DirtMcgirt_82

DirtMcgirt_83

DirtMcgirt_84

DirtMcgirt_85

DirtMcgirt_86

DirtMcgirt_87

DirtMcgirt_88

DirtMcgirt_89

DirtMcgirt_90

DirtMcgirt_91

DirtMcgirt_92

DirtMcgirt_93

DirtMcgirt_94

DirtMcgirt_95
(MerR-like helix-turn-helix DNA binding domain protein)

DirtMcgirt_96

DirtMcgirt_97

DirtMcgirt_98

DirtMcgirt_99

DirtMcgirt_100

DirtMcgirt_101
(glycosyltransferase)

DirtMcgirt_102

DirtMcgirt_103

DirtMcgirt_104
(glycosyltransferase)

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMZ681512
Refseq NumberNone yet
Published in PaperPope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity
Archiving Info
Archiving status Archived
Pitt Freezer Box# 34
Pitt Freezer Box Grid# 47
Available Files
Plaque PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload