Mycobacterium phage Yorick
Yorick Plaque Picture
Yorick EM Picture
Know something about this phage that we don't? Modify its data.
Detailed Information for Phage Yorick
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByKaylee Mills
Year Found2021
Location FoundRock Hill, SC United States
Finding InstitutionWinthrop University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature36°C
GPS Coordinates34.940113 N, 81.032921 W Map
Discovery NotesSoil sample was collected under flower bed located at the Little Chapel on the Winthrop University campus.
Naming NotesI am quite fond of Shakespeare's Hamlet. The graveyard scene is my favorite bit, so it felt befitting. Alas, poor Yorick!
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedNov 29, 2021
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage933
Genome length (bp)59227
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCGGTAGGCGC
GC Content61.3%
Fasta file available?Yes: Download fasta file
Characterization
ClusterF
SubclusterF1
Cluster Life CycleTemperate
Other Cluster Members

Click to View

Soul22 (None)

Akhila (F1)

Alexphander (F1)

ArcusAngelus (F1)

Ardmore (F1)

Aubs (F1)

Awesomesauce (F1)

Batiatus (F1)

Beakin (F1)

BigPhil (F1)

Bipolar (F1)

Blexus (F1)

BobaPhett (F1)

Bobi (F1)

BodEinwohner17 (F1)

Boomer (F1)

Brocalys (F1)

Bubbles123 (F1)

Burwell21 (F1)

BuzzLyseyear (F1)

ByChance (F1)

Byougenkin (F1)

Cabrinians (F1)

CaptainTrips (F1)

Cerasum (F1)

Che8 (F1)

Chuckly (F1)

Clifton (F1)

Coco12 (F1)

Cornucopia (F1)

Daenerys (F1)

Dante (F1)

DaWorst (F1)

DeadP (F1)

DillTech15 (F1)

DirtMcgirt (F1)

DLane (F1)

Donkeykong (F1)

Doomphist (F1)

Dorothy (F1)

DotProduct (F1)

Doug (F1)

Drago (F1)

DRBy19 (F1)

Eish (F1)

EleanorGeorge (F1)

Emma (F1)

Empress (F1)

Enby (F1)

Eradicator (F1)

Estave1 (F1)

Fancypants (F1)

Filuzino (F1)

Firehouse51 (F1)

Flathead (F1)

Florinda (F1)

Frankie (F1)

Fruitloop (F1)

Galactic (F1)

Gandalph (F1)

Geralt (F1)

GigiOuiOui (F1)

Girafales (F1)

Girr (F1)

Gorge (F1)

GUmbie (F1)

Hades (F1)

Hamulus (F1)

Harley (F1)

Hegedechwinu (F1)

Hlubikazi (F1)

Ibhubesi (F1)

Inventum (F1)

IrishSherpFalk (F1)

JalFarm20 (F1)

James (F1)

Jarcob (F1)

Job42 (F1)

JoeyJr (F1)

Juice456 (F1)

Kenuha5 (F1)

Kersh (F1)

Kimberlium (F1)

KingMidas (F1)

Kingsley (F1)

Koella (F1)

Krakatau (F1)

KristaRAM (F1)

LastJedi (F1)

Latretium (F1)

Leozinho (F1)

Leperchaun (F1)

LilMoolah (F1)

Lizziana (F1)

Llama (F1)

Llij (F1)

Lorde (F1)

Madiba (F1)

MadMen (F1)

Mahavrat (F1)

Mandlovu (F1)

Mantra (F1)

Martik (F1)

Mattes (F1)

Melissauren88 (F1)

MilanaBonita (F1)

MilleniumForce (F1)

MinionDave (F1)

Minnie (F1)

Misha28 (F1)

MisterCuddles (F1)

Modragons (F1)

Moonbeam (F1)

Mova (F1)

Mozy (F1)

Ms6 (F1)

Mutaforma13 (F1)

Nimbo (F1)

Nitzel (F1)

Nivrat (F1)

NormanBulbieJr (F1)

Ochi17 (F1)

OfUltron (F1)

Ogopogo (F1)

OldBen (F1)

OlympiaSaint (F1)

Ovechkin (F1)

OwlsT2W (F1)

Pacc40 (F1)

Phalconet (F1)

Phanphagia (F1)

PHappiness (F1)

Phasih (F1)

Phatniss (F1)

Piper2020 (F1)

Pippy (F1)

Plumbus (F1)

PMC (F1)

Poenanya (F1)

Polka14 (F1)

Pollywog (F1)

PopTart (F1)

Priscilla (F1)

QuickMath (F1)

Quico (F1)

Ramsey (F1)

Rita (F1)

RitaG (F1)

Rockne (F1)

RockyHorror (F1)

Royals2015 (F1)

Ruby (F1)

Saal (F1)

Sabbb (F1)

Sandalphon (F1)

Sarma624 (F1)

Sassafras (F1)

SassyB (F1)

Scottish (F1)

Seabastian (F1)

Seagreen (F1)

SG4 (F1)

Shauna1 (F1)

ShiLan (F1)

SimranZ1 (F1)

SiSi (F1)

Sparkdehlily (F1)

Spartacus (F1)

Spikelee (F1)

Spoonbill (F1)

StAnnes (F1)

Strokeseat (F1)

SuperGrey (F1)

SwagPigglett (F1)

Taj (F1)

TDanisky (F1)

TootsiePop (F1)

Tootsieroll (F1)

Tweety (F1)

UncleRicky (F1)

Velveteen (F1)

Veteran (F1)

VRedHorse (F1)

Wachhund (F1)

Wee (F1)

Whatsapiecost (F1)

Whouxphf (F1)

WillSterrel (F1)

XFactor (F1)

Yorick (F1)

Zerg (F1)

Zizzle (F1)

Avani (F2)

Che9d (F2)

Demsculpinboyz (F2)

Jabbawokkie (F2)

Yoshi (F2)

Zapner (F2)

Squirty (F3)

Renaud18 (F4)

TChen (F4)

ThetaBob (F4)

Cornie (F5)

Annotating InstitutionWinthrop University
Annotation StatusIn GenBank
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

Click to View

Yorick_1
(terminase, small subunit)

Yorick_2
(terminase, large subunit)

Yorick_3
(portal protein)

Yorick_4
(capsid maturation protease)

Yorick_5
(scaffolding protein)

Yorick_6
(major capsid protein)

Yorick_7
(head-to-tail adaptor)

Yorick_8
(head-to-tail stopper)

Yorick_9

Yorick_10
(tail terminator)

Yorick_11
(major tail protein)

Yorick_12
(tail assembly chaperone)

Yorick_13
(tail assembly chaperone)

Yorick_14
(tape measure protein)

Yorick_15
(minor tail protein)

Yorick_16
(minor tail protein)

Yorick_17
(minor tail protein)

Yorick_18
(minor tail protein)

Yorick_19
(minor tail protein, D-ala-D-ala carboxypeptidase)

Yorick_20
(minor tail protein)

Yorick_21
(minor tail protein)

Yorick_22

Yorick_23
(minor tail protein)

Yorick_24

Yorick_25

Yorick_26

Yorick_27

Yorick_28

Yorick_29

Yorick_30
(lysin A)

Yorick_31
(lysin B)

Yorick_32
(holin)

Yorick_33

Yorick_34

Yorick_35
(DnaQ-like (DNA polymerase III subunit))

Yorick_36

Yorick_37

Yorick_38

Yorick_39

Yorick_40
(tyrosine integrase)

Yorick_41

Yorick_42

Yorick_43
(immunity repressor)

Yorick_44
(Cro (control of repressor's operator))

Yorick_45
(antirepressor)

Yorick_46

Yorick_47

Yorick_48

Yorick_49
(excise)

Yorick_50

Yorick_51

Yorick_52

Yorick_53

Yorick_54

Yorick_55

Yorick_56
(WhiB family transcription factor)

Yorick_57

Yorick_58
(WhiB family transcription factor)

Yorick_59
(helix-turn-helix DNA binding domain)

Yorick_60

Yorick_61

Yorick_62

Yorick_63
(AAA-ATPase)

Yorick_64
(HNH endonuclease)

Yorick_65
(DNA helicase)

Yorick_66
(DNA methyltransferase)

Yorick_67

Yorick_68

Yorick_69
(DNA methyltransferase)

Yorick_70

Yorick_71
(G-I-Y Y-I-G endonuclease)

Yorick_72

Yorick_73

Yorick_74

Yorick_75

Yorick_76

Yorick_77

Yorick_78

Yorick_79

Yorick_80

Yorick_81

Yorick_82

Yorick_83

Yorick_84

Yorick_85

Yorick_86

Yorick_87
(GIY-YIG endonuclease)

Yorick_88

Yorick_89

Yorick_90

Yorick_91

Yorick_92

Yorick_93

Yorick_94

Yorick_95

Yorick_96

Yorick_97
(glycosyltransferase)

Yorick_98

Yorick_99
(N-acetylglucosminyltransferase)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionON456356
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 132
Pitt Freezer Box Grid# H2
Available Files
Restriction Digest PictureDownload
GenBank File for PhameratorDownload