Mycobacterium phage Girr
Know something about this phage that we don't? Modify its data.
Detailed Information for Phage Girr
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByHarsha Jujjavarapu and Aakash Gandhi
Year Found2012
Location FoundSt. Louis, MO United States
Finding InstitutionWashington University in St. Louis
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates38.6457 N, 90.3114 W Map
Discovery NotesCollected on 9/2/2012 at 4:37 pm.
Temperature was 84 F and sample was at a depth of around 6 inches.
This sample was taken from the Burning Kumquat which is a student-run organic garden located on Shepley Drive. This carrot patch only just geminated into seedlings and is regularly fertilized with compost.
Sample site was teeming with life (ants, aphids).
Naming NotesThe name of this phage came from the robot from the TV show Invader Zim.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJun 4, 2013
Sequencing FacilityThe McDonnell Genome Institute at Washington University
Shotgun Sequencing Method454 Pyrosequencing
Approximate Shotgun Coverage397
Sanger Finishing Reactions7
Genome length (bp)57754
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCGGACGGCGC
GC Content61.4%
Fasta file available?Yes: Download fasta file
Characterization
ClusterF
SubclusterF1
Cluster Life CycleTemperate
Other Cluster Members

Click to View

AbbyNormal (None)

Grib (None)

Kishmeesh (None)

KitCat (None)

MightyMorph (None)

Puck (None)

Renaud18 (None)

WIVsmall1220 (None)

Alexphander (F1)

Anaxagorus (F1)

Ant1Dodson (F1)

ArcusAngelus (F1)

Ardmore (F1)

Arienne (F1)

Asmart (F1)

Awesomesauce (F1)

BabytheFifth (F1)

Barson (F1)

Batiatus (F1)

BigPhil (F1)

Bipolar (F1)

BobaPhett (F1)

Bobi (F1)

BodEinwohner17 (F1)

BoomCrackaPop (F1)

Boomer (F1)

Braemar (F1)

Brocalys (F1)

Bubbles123 (F1)

Burwell21 (F1)

BuzzLyseyear (F1)

ByChance (F1)

Byougenkin (F1)

Cabrinians (F1)

Cakepop (F1)

CaptainTrips (F1)

Cerasum (F1)

Che8 (F1)

Chhibber (F1)

Chikondi (F1)

Chuckly (F1)

Clifton (F1)

Clover (F1)

CoolGuy (F1)

Cornucopia (F1)

Daenerys (F1)

Danda (F1)

Dante (F1)

DaWorst (F1)

DCrust15 (F1)

DeadP (F1)

Desmond (F1)

DillTech15 (F1)

DirtMcgirt (F1)

DLane (F1)

Docouto (F1)

Dorothy (F1)

DotProduct (F1)

Drago (F1)

DRBy19 (F1)

Eish (F1)

EleanorGeorge (F1)

Emma (F1)

Empress (F1)

Enby (F1)

Estave1 (F1)

Estella (F1)

Fancypants (F1)

Filuzino (F1)

Firehouse51 (F1)

Flathead (F1)

Florinda (F1)

Frankie (F1)

Freddie4 (F1)

Fruitloop (F1)

FunOne (F1)

Galactic (F1)

Gardregs (F1)

Gendisarray (F1)

Genesis (F1)

Geralt (F1)

Girafales (F1)

Girr (F1)

Gorge (F1)

GreatPumpkin (F1)

GUmbie (F1)

Hades (F1)

Hamulus (F1)

Harley (F1)

Hegedechwinu (F1)

Ibhubesi (F1)

Inventum (F1)

IrishSherpFalk (F1)

James (F1)

Job42 (F1)

JoeyJr (F1)

Judylove (F1)

Kalikimaka (F1)

Katya (F1)

Kenuha5 (F1)

Kersh (F1)

Kimberlium (F1)

KingMidas (F1)

Kingsley (F1)

Koella (F1)

Krakatau (F1)

KristaRAM (F1)

Latretium (F1)

LillyLatzon (F1)

LilMoolah (F1)

Lizziana (F1)

Llama (F1)

Llij (F1)

Lorde (F1)

Lysinator (F1)

MacDrage (F1)

Mahavrat (F1)

Mantra (F1)

Mattes (F1)

McDiddy (F1)

Melissauren88 (F1)

MerrillCO18 (F1)

Mille (F1)

MilleniumForce (F1)

MinionDave (F1)

Minnie (F1)

Misha28 (F1)

MisterCuddles (F1)

Modragons (F1)

Mozy (F1)

Ms6 (F1)

Mutaforma13 (F1)

Myosotis (F1)

Nemain (F1)

Nimbo (F1)

Nitzel (F1)

Nivrat (F1)

Noodle (F1)

NormanBulbieJr (F1)

Ochi17 (F1)

OfUltron (F1)

Ogopogo (F1)

OldBen (F1)

OlympiaSaint (F1)

Ovechkin (F1)

OwlsT2W (F1)

Pacc40 (F1)

Peanut21s (F1)

Phabio (F1)

PHappiness (F1)

Phasih (F1)

Phatniss (F1)

PhrankthaTank (F1)

Piper2020 (F1)

Pippy (F1)

Plackberry (F1)

Plumbus (F1)

PMC (F1)

Poenanya (F1)

Polka14 (F1)

Pollywog (F1)

PopTart (F1)

Priscilla (F1)

Prometheus (F1)

QuickMath (F1)

Quico (F1)

Ramsey (F1)

RitaG (F1)

Rocktrap (F1)

RockyHorror (F1)

Rombolo (F1)

Royals2015 (F1)

Ruby (F1)

S2Kari (F1)

S2TSquared (F1)

Saal (F1)

SaltyMike (F1)

Sandalphon (F1)

SassyB (F1)

Scottish (F1)

Seagreen (F1)

SG4 (F1)

Sharpshooter (F1)

Shauna1 (F1)

SherL (F1)

ShiLan (F1)

SimranZ1 (F1)

SiSi (F1)

Sparkdehlily (F1)

Spartacus (F1)

Spikelee (F1)

Spoonbill (F1)

Strokeseat (F1)

SuperGrey (F1)

SwagPigglett (F1)

Taj (F1)

Taus (F1)

TDanisky (F1)

TonaldTDrump (F1)

TootsiePop (F1)

Tweety (F1)

UncleRicky (F1)

Velveteen (F1)

Wachhund (F1)

Wee (F1)

WheatBerry18 (F1)

Whouxphf (F1)

WillSterrel (F1)

WIVsmall (F1)

XFactor (F1)

Zerg (F1)

Avani (F2)

Che9d (F2)

Demsculpinboyz (F2)

Jabbawokkie (F2)

Yoshi (F2)

Zapner (F2)

Squirty (F3)

TChen (F4)

ThetaBob (F4)

Cornie (F5)

Annotation StatusIn GenBank
Plaque NotesPlaques were medium sized and clear.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

Click to View

Girr_1
(terminase small subunit)

Girr_2
(terminase large subunit)

Girr_3
(portal protein)

Girr_4
(capsid maturation protease)

Girr_5
(scaffolding protein)

Girr_6
(major capsid protein)

Girr_7
(head-to-tail connector complex protein)

Girr_8
(head-to-tail connector complex protein)

Girr_9

Girr_10

Girr_11
(major tail protein)

Girr_12
(tail assembly chaperone)

Girr_13
(tail assembly chaperone)

Girr_14
(tape measure protein)

Girr_15
(minor tail protein)

Girr_16
(minor tail protein)

Girr_17
(minor tail protein)

Girr_18
(minor tail protein)

Girr_19
(minor tail protein)

Girr_20

Girr_21

Girr_22

Girr_23

Girr_24

Girr_25
(helix-turn-helix DNA binding domain protein)

Girr_26

Girr_27

Girr_28

Girr_29

Girr_30

Girr_31
(lysin A)

Girr_32
(HNH endonuclease)

Girr_33
(lysin B)

Girr_34
(holin)

Girr_35

Girr_36

Girr_37
(DnaQ-like exonuclease)

Girr_38

Girr_39

Girr_40

Girr_41

Girr_42

Girr_43

Girr_44
(integrase)

Girr_45

Girr_46
(immunity repressor)

Girr_47
(Cro protein)

Girr_48
(antirepressor)

Girr_49

Girr_50
(excise)

Girr_51

Girr_52

Girr_53

Girr_54

Girr_55
(WhiB family transcription factor)

Girr_56

Girr_57
(WhiB family transcription factor)

Girr_58
(helix-turn-helix DNA binding domain protein)

Girr_59

Girr_60

Girr_61

Girr_62

Girr_63
(HNH endonuclease)

Girr_64
(DNA helicase/methylase)

Girr_65

Girr_66

Girr_67

Girr_68
(PAPS reductase-like domain)

Girr_69

Girr_70

Girr_71

Girr_72

Girr_73

Girr_74

Girr_75

Girr_76

Girr_77

Girr_78

Girr_79

Girr_80
(MPME1 protein)

Girr_81

Girr_82

Girr_83

Girr_84

Girr_85

Girr_86

Girr_87

Girr_88

Girr_89

Girr_90

Girr_91
(helix-turn-helix DNA binding domain protein)

Girr_92

Girr_93
(ribbon-helix-helix DNA binding domain protein)

Girr_95

Girr_96

Girr_97

Girr_98

Girr_99

Girr_100
(glycosyltransferase)

Girr_101

Girr_102
(glycosyltransferase)

Girr_103
(HNH endonuclease)

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMH669003
Refseq NumberNone yet
Published in PaperPope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity
Archiving Info
Archiving status Archived
SEA Lysate Titer 1.28*10^10
Pitt Freezer Box# 42
Pitt Freezer Box Grid# 13
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload