The Actinobacteriophage Database

Mycobacterium phage CaptainTrips

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Detailed Information for Phage CaptainTrips
Discovery Information
Isolation Host	Mycobacterium smegmatis mc²155
Found By	Emily Powell
Year Found	2012
Location Found	Woodville, AL USA
Finding Institution	Jacksonville State University
Program	Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?	Yes
Isolation Temperature	Not entered
GPS Coordinates	34.573975 N, 86.221176 W Map
Discovery Notes	Sample was collected at Cathedral Caverns State Park, located in northern Marshall County, AL. The sample was taken from the top bank of Mystery River, which flows through the cave. Sample collection depth: 2 cm Collection date: September 1, 2012 Air temperature at collection: 15.6 degrees C. Approximate moisture content: Saturated/extremely moist
Naming Notes	CaptainTrips is named in honor of the man-made superflu (influenza) virus featured in Stephen King's book "The Stand". Captain Trips is accidentally released from a military facility, and subsequently kills over 99% of the global population.
Sequencing Information
Sequencing Complete?	Yes
Date Sequencing Completed	Jan 10, 2013
Sequencing Facility	Virginia Commonwealth University Nucleic Acids Research Facilities
Shotgun Sequencing Method	454 Pyrosequencing
Approximate Shotgun Coverage	320
Genome length (bp)	57328
Character of genome ends	3' Sticky Overhang
Overhang Length	10 bases
Overhang Sequence	CGGAAGGCGC
GC Content	61.5%
Fasta file available?	Yes: Download fasta file
Characterization
Cluster	F
Subcluster	F1
Cluster Life Cycle	Temperate
Other Cluster Members	Click to View Soul22 (None) Akhila (F1) Alexphander (F1) ArcusAngelus (F1) Ardmore (F1) Awesomesauce (F1) Batiatus (F1) BigPhil (F1) Bipolar (F1) Blexus (F1) BobaPhett (F1) Bobi (F1) BodEinwohner17 (F1) Boomer (F1) Brocalys (F1) Bubbles123 (F1) Burwell21 (F1) BuzzLyseyear (F1) ByChance (F1) Byougenkin (F1) Cabrinians (F1) CaptainTrips (F1) Cerasum (F1) Che8 (F1) Chuckly (F1) Clifton (F1) Coco12 (F1) Cornucopia (F1) Daenerys (F1) Dante (F1) DaWorst (F1) DeadP (F1) DillTech15 (F1) DirtMcgirt (F1) DLane (F1) Donkeykong (F1) Doomphist (F1) Dorothy (F1) DotProduct (F1) Doug (F1) Drago (F1) DRBy19 (F1) Eish (F1) EleanorGeorge (F1) Emma (F1) Empress (F1) Enby (F1) Estave1 (F1) Fancypants (F1) Filuzino (F1) Firehouse51 (F1) Flathead (F1) Florinda (F1) Frankie (F1) Fruitloop (F1) Galactic (F1) Gandalph (F1) Geralt (F1) Girafales (F1) Girr (F1) Gorge (F1) GUmbie (F1) Hades (F1) Hamulus (F1) Harley (F1) Hegedechwinu (F1) Hlubikazi (F1) Ibhubesi (F1) Inventum (F1) IrishSherpFalk (F1) James (F1) Job42 (F1) JoeyJr (F1) Juice456 (F1) Kenuha5 (F1) Kersh (F1) Kimberlium (F1) KingMidas (F1) Kingsley (F1) Koella (F1) Krakatau (F1) KristaRAM (F1) LastJedi (F1) Latretium (F1) LilMoolah (F1) Lizziana (F1) Llama (F1) Llij (F1) Lorde (F1) Mahavrat (F1) Mandlovu (F1) Mantra (F1) Martik (F1) Mattes (F1) Melissauren88 (F1) MilanaBonita (F1) MilleniumForce (F1) MinionDave (F1) Minnie (F1) Misha28 (F1) MisterCuddles (F1) Modragons (F1) Moonbeam (F1) Mova (F1) Mozy (F1) Mutaforma13 (F1) Nimbo (F1) Nitzel (F1) Nivrat (F1) NormanBulbieJr (F1) Ochi17 (F1) OfUltron (F1) Ogopogo (F1) OldBen (F1) OlympiaSaint (F1) Ovechkin (F1) OwlsT2W (F1) Pacc40 (F1) Phanphagia (F1) PHappiness (F1) Phasih (F1) Phatniss (F1) Piper2020 (F1) Pippy (F1) Plumbus (F1) PMC (F1) Poenanya (F1) Polka14 (F1) Pollywog (F1) PopTart (F1) Priscilla (F1) QuickMath (F1) Quico (F1) Ramsey (F1) RitaG (F1) RockyHorror (F1) Royals2015 (F1) Ruby (F1) Saal (F1) Sandalphon (F1) Sassafras (F1) SassyB (F1) Scottish (F1) Seabastian (F1) Seagreen (F1) SG4 (F1) Shauna1 (F1) ShiLan (F1) SimranZ1 (F1) SiSi (F1) Sparkdehlily (F1) Spartacus (F1) Spikelee (F1) Spoonbill (F1) StAnnes (F1) Strokeseat (F1) SuperGrey (F1) SwagPigglett (F1) Taj (F1) TDanisky (F1) TootsiePop (F1) Tweety (F1) UncleRicky (F1) Velveteen (F1) Veteran (F1) Wachhund (F1) Wee (F1) Whouxphf (F1) WillSterrel (F1) XFactor (F1) Zerg (F1) Avani (F2) Che9d (F2) Demsculpinboyz (F2) Jabbawokkie (F2) Yoshi (F2) Zapner (F2) Squirty (F3) Renaud18 (F4) TChen (F4) ThetaBob (F4) Cornie (F5)
Annotating Institution	Unknown or unassigned
Annotation Status	In GenBank
Morphotype	Siphoviridae
Has been Phamerated?	Yes
Gene List	Click to View CaptainTrips_1 CaptainTrips_2 (terminase small subunit) CaptainTrips_3 (terminase large subunit) CaptainTrips_4 (portal protein) CaptainTrips_5 (capsid maturation protease) CaptainTrips_6 (scaffolding protein) CaptainTrips_7 (major capsid protein) CaptainTrips_8 (head-to-tail adaptor) CaptainTrips_9 (head-to-tail stopper) CaptainTrips_10 CaptainTrips_11 (tail terminator) CaptainTrips_12 (major tail subunit) CaptainTrips_13 (tail assembly chaperone) CaptainTrips_14 (tail assembly chaperone) CaptainTrips_15 (tapemeasure) CaptainTrips_16 (minor tail protein) CaptainTrips_17 (minor tail protein) CaptainTrips_18 (minor tail protein) CaptainTrips_19 (minor tail protein) CaptainTrips_20 (minor tail protein) CaptainTrips_21 (minor tail protein) CaptainTrips_22 CaptainTrips_23 CaptainTrips_24 CaptainTrips_25 CaptainTrips_26 CaptainTrips_27 CaptainTrips_28 CaptainTrips_29 CaptainTrips_30 CaptainTrips_31 (lysin A) CaptainTrips_32 (lysin B) CaptainTrips_33 (holin) CaptainTrips_34 CaptainTrips_35 CaptainTrips_36 (DnaQ-like nuclease) CaptainTrips_37 CaptainTrips_38 CaptainTrips_39 CaptainTrips_40 CaptainTrips_41 (integrase) CaptainTrips_42 CaptainTrips_43 (immunity repressor) CaptainTrips_44 (CRO protein) CaptainTrips_45 CaptainTrips_46 CaptainTrips_47 CaptainTrips_48 CaptainTrips_49 CaptainTrips_50 CaptainTrips_51 CaptainTrips_52 CaptainTrips_53 CaptainTrips_54 (WhiB) CaptainTrips_55 CaptainTrips_56 (WhiB) CaptainTrips_57 (HTH DNA binding domain protein) CaptainTrips_58 CaptainTrips_59 CaptainTrips_60 CaptainTrips_61 CaptainTrips_62 (RecA) CaptainTrips_63 (HNH endonuclease) CaptainTrips_64 (helicase) CaptainTrips_65 (DNA methylase) CaptainTrips_66 CaptainTrips_67 CaptainTrips_68 CaptainTrips_69 CaptainTrips_70 CaptainTrips_71 CaptainTrips_72 CaptainTrips_73 CaptainTrips_74 CaptainTrips_75 CaptainTrips_76 CaptainTrips_77 CaptainTrips_78 CaptainTrips_79 CaptainTrips_80 CaptainTrips_81 CaptainTrips_82 CaptainTrips_83 CaptainTrips_84 CaptainTrips_85 CaptainTrips_86 CaptainTrips_87 CaptainTrips_88 CaptainTrips_89 CaptainTrips_90 CaptainTrips_91 CaptainTrips_92 CaptainTrips_93 CaptainTrips_94 CaptainTrips_95 CaptainTrips_96 CaptainTrips_97 CaptainTrips_98 CaptainTrips_99 CaptainTrips_100 CaptainTrips_101 CaptainTrips_102 CaptainTrips_103 (glycosyltransferase) CaptainTrips_104 (Ser/Thr kinase) CaptainTrips_105 CaptainTrips_106 (glycosyltransferase) CaptainTrips_107 (HNH endonuclease)
Submitted Annotation in DNA Master Format	Download
Author List	Download
Annotation Cover Sheet	Download
Publication Info
Uploaded to GenBank?	Yes
GenBank Accession	KM652553
Refseq Number	None yet
Published in Paper	Pope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity
Archiving Info
Archiving status	Archived
Available Files
Plaque Picture	Download
Restriction Digest Picture	Download
EM Picture	Download

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