Detailed Information for Phage Shauna1 |
Discovery Information |
Isolation Host | Mycobacterium smegmatis mc²155 |
Found By | Marshall Sheide |
Year Found | 2010 |
Location Found | Orem, UT USA |
Finding Institution | Brigham Young University |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | Yes |
Isolation Temperature | Not entered |
GPS Coordinates | 40.325986 N, 111.735480 W Map |
Discovery Notes | It was right next to a strawberry patch on some moist ground. Temperature was about 70 degrees Fahrenheit, and it was found in some rich soil in a green house. |
Sequencing Information |
Sequencing Complete? | Yes |
Date Sequencing Completed | Mar 1, 2011 |
Genome length (bp) | 59315 |
Character of genome ends | 3' Sticky Overhang |
Overhang Length | 10 bases |
Overhang Sequence | CGGTAGGCGC |
GC Content | 61.7% |
Fasta file available? | Yes: Download fasta file |
Characterization |
Cluster | F |
Subcluster | F1 |
Cluster Life Cycle | Temperate |
Other Cluster Members |
|
Annotating Institution | Unknown or unassigned |
Annotation Status | In GenBank |
Plaque Notes | Plaques are very clear and show up very quickly. the phage has a lytic cycle and will create a web plate withing 24 go 30 hours. there isn't any variation except that the plaques became more and more clear as I purified it. After dilution 3, the morphology has stayed the same each time. |
Morphotype | Siphoviridae |
Number of Genes | 107 |
Has been Phamerated? | Yes |
Gene List |
|
Submitted Minimal DNA Master File | Download |
Publication Info |
Uploaded to GenBank? | Yes |
GenBank Accession | JN020141 |
Refseq Number | None yet |
Published in Paper | Pope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity |
Archiving Info |
Archiving status |
Archived |
SEA Designator |
2010BRYOshauna1MGS |
Pitt Freezer Box# |
11 |
Pitt Freezer Box Grid# |
53 |
Available Files |
Plaque Picture | Download |
EM Picture | Download |
XML File | Download |
GenBank File for Phamerator | Download |