Mycobacterium phage Krakatau
Know something about this phage that we don't? Modify its data.
Detailed Information for Phage Krakatau
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByAgustin Borjon
Year Found2008
Location FoundSanta Cruz, CA USA
Finding InstitutionUniversity of California, Santa Cruz
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates36.999383 N, 122.05305 W Map
Discovery NotesTaken from a compost Heap, depth five inches, 77°F, at the UCSC Merrill College- Merrill Gardens. Several compost heaps lined the road of the Merrill Gardens. The one I chose to collect from was the second from the left.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedFeb 16, 2012
Genome length (bp)53058
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCGGTAGGCGC
GC Content61.5%
Fasta file available?Yes: Download fasta file
Characterization
ClusterF
SubclusterF1
Cluster Life CycleTemperate
Other Cluster Members

Click to View

Renaud18 (None)

Alexphander (F1)

ArcusAngelus (F1)

Ardmore (F1)

Awesomesauce (F1)

Batiatus (F1)

BigPhil (F1)

Bipolar (F1)

Blexus (F1)

BobaPhett (F1)

Bobi (F1)

BodEinwohner17 (F1)

Boomer (F1)

Brocalys (F1)

Bubbles123 (F1)

Burwell21 (F1)

BuzzLyseyear (F1)

ByChance (F1)

Byougenkin (F1)

Cabrinians (F1)

CaptainTrips (F1)

Cerasum (F1)

Che8 (F1)

Chuckly (F1)

Clifton (F1)

Cornucopia (F1)

Daenerys (F1)

Dante (F1)

DaWorst (F1)

DeadP (F1)

DillTech15 (F1)

DirtMcgirt (F1)

DLane (F1)

Donkeykong (F1)

Doomphist (F1)

Dorothy (F1)

DotProduct (F1)

Doug (F1)

Drago (F1)

DRBy19 (F1)

Eish (F1)

EleanorGeorge (F1)

Emma (F1)

Empress (F1)

Enby (F1)

Estave1 (F1)

Fancypants (F1)

Filuzino (F1)

Firehouse51 (F1)

Flathead (F1)

Florinda (F1)

Frankie (F1)

Fruitloop (F1)

Galactic (F1)

Geralt (F1)

Girafales (F1)

Girr (F1)

Gorge (F1)

GUmbie (F1)

Hades (F1)

Hamulus (F1)

Harley (F1)

Hegedechwinu (F1)

Ibhubesi (F1)

Inventum (F1)

IrishSherpFalk (F1)

James (F1)

Job42 (F1)

JoeyJr (F1)

Juice456 (F1)

Kenuha5 (F1)

Kersh (F1)

Kimberlium (F1)

KingMidas (F1)

Kingsley (F1)

Koella (F1)

Krakatau (F1)

KristaRAM (F1)

LastJedi (F1)

Latretium (F1)

LilMoolah (F1)

Lizziana (F1)

Llama (F1)

Llij (F1)

Lorde (F1)

Mahavrat (F1)

Mantra (F1)

Mattes (F1)

Melissauren88 (F1)

MilleniumForce (F1)

MinionDave (F1)

Minnie (F1)

Misha28 (F1)

MisterCuddles (F1)

Modragons (F1)

Mozy (F1)

Mutaforma13 (F1)

Nimbo (F1)

Nitzel (F1)

Nivrat (F1)

NormanBulbieJr (F1)

Ochi17 (F1)

OfUltron (F1)

Ogopogo (F1)

OldBen (F1)

OlympiaSaint (F1)

Ovechkin (F1)

OwlsT2W (F1)

Pacc40 (F1)

Phanphagia (F1)

PHappiness (F1)

Phasih (F1)

Phatniss (F1)

Piper2020 (F1)

Pippy (F1)

Plumbus (F1)

PMC (F1)

Poenanya (F1)

Polka14 (F1)

Pollywog (F1)

PopTart (F1)

Priscilla (F1)

QuickMath (F1)

Quico (F1)

Ramsey (F1)

RitaG (F1)

RockyHorror (F1)

Royals2015 (F1)

Ruby (F1)

Saal (F1)

Sandalphon (F1)

SassyB (F1)

Scottish (F1)

Seabastian (F1)

Seagreen (F1)

SG4 (F1)

Shauna1 (F1)

ShiLan (F1)

SimranZ1 (F1)

SiSi (F1)

Sparkdehlily (F1)

Spartacus (F1)

Spikelee (F1)

Spoonbill (F1)

StAnnes (F1)

Strokeseat (F1)

SuperGrey (F1)

SwagPigglett (F1)

Taj (F1)

TDanisky (F1)

TootsiePop (F1)

Tweety (F1)

UncleRicky (F1)

Velveteen (F1)

Veteran (F1)

Wachhund (F1)

Wee (F1)

Whouxphf (F1)

WillSterrel (F1)

XFactor (F1)

Zerg (F1)

Avani (F2)

Che9d (F2)

Demsculpinboyz (F2)

Jabbawokkie (F2)

Yoshi (F2)

Zapner (F2)

Squirty (F3)

TChen (F4)

ThetaBob (F4)

Cornie (F5)

Annotating InstitutionUniversity of Pittsburgh
Annotation StatusIn GenBank
Plaque NotesApproximately 1.5mm radius. Clear with turbid halo surrounded by clear ring
24 hour incubation period in 37oC conditions
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

Click to View

Krakatau_1
(HNH endonuclease)

Krakatau_2

Krakatau_3
(terminase)

Krakatau_4
(portal protein)

Krakatau_5
(capsid maturation protease)

Krakatau_6
(scaffolding protein)

Krakatau_7
(major capsid protein)

Krakatau_8
(head-to-tail adaptor)

Krakatau_9
(head-to-tail stopper)

Krakatau_10

Krakatau_11
(tail terminator)

Krakatau_12
(major tail protein)

Krakatau_13
(tail assembly chaperone)

Krakatau_14
(tail assembly chaperone)

Krakatau_15
(tape measure protein)

Krakatau_16
(minor tail protein)

Krakatau_17
(minor tail protein)

Krakatau_18

Krakatau_19
(minor tail protein)

Krakatau_20

Krakatau_21

Krakatau_22

Krakatau_23

Krakatau_24

Krakatau_25

Krakatau_26

Krakatau_27

Krakatau_28

Krakatau_29

Krakatau_30

Krakatau_31

Krakatau_32

Krakatau_33

Krakatau_34

Krakatau_35

Krakatau_36
(DnaQ-like exonuclease)

Krakatau_37

Krakatau_38

Krakatau_39

Krakatau_40

Krakatau_41
(integrase)

Krakatau_42

Krakatau_43
(immunity repressor)

Krakatau_44

Krakatau_45

Krakatau_46

Krakatau_47

Krakatau_48

Krakatau_49

Krakatau_50

Krakatau_51

Krakatau_52

Krakatau_53

Krakatau_54

Krakatau_55
(WhiB family transcription factor)

Krakatau_56

Krakatau_57

Krakatau_58

Krakatau_59

Krakatau_60

Krakatau_61

Krakatau_62

Krakatau_63

Krakatau_64

Krakatau_65

Krakatau_66

Krakatau_67

Krakatau_68

Krakatau_69

Krakatau_70

Krakatau_71

Krakatau_72

Krakatau_73

Krakatau_74

Krakatau_75

Krakatau_76

Krakatau_77

Krakatau_78

Krakatau_79

Krakatau_80

Krakatau_81

Krakatau_82

Krakatau_83

Krakatau_84

Krakatau_85

Krakatau_86

Krakatau_87

Krakatau_88

Krakatau_89

Krakatau_90

Krakatau_91

Krakatau_92

Krakatau_93

Krakatau_94
(galactosyltransferase)

Krakatau_95

Krakatau_96
(glycosyltransferase)

Krakatau_97

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMH590598
Refseq NumberNone yet
Published in PaperPope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity
Archiving Info
Archiving status Archived
SEA Designator 2008ucscKrakatau
SEA Lysate Titer 2.8X10^10
Pitt Freezer Box# 6
Pitt Freezer Box Grid# 73
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload