Mycobacterium phage Madiba
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Detailed Information for Phage Madiba
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByDeborah Jacobs-Sera
Year Found2018
Location FoundDurban, South Africa
Finding InstitutionUniversity of Pittsburgh
ProgramPhage Hunters Integrating Research and Education
From enriched soil sample?Yes
Isolation Temperature37°C
GPS Coordinates29.838968 S, 30.996173 E Map
Discovery NotesFound in the front yard of St. Anne's Guest House in Durban.
Naming Notes"Madiba"is a Southern African title of respect for Nelson Mandela, derived from his Xhosa clan name.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedAug 19, 2021
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1249
Genome length (bp)56056
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCCGATGGCAT
GC Content61.4%
Fasta file available?Yes: Download fasta file
Characterization
ClusterF
SubclusterF1
Cluster Life CycleTemperate
Lysogeny NotesColonies formed in clearing from spotted lysate.
Other Cluster Members

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Soul22 (None)

Akhila (F1)

Alexphander (F1)

ArcusAngelus (F1)

Ardmore (F1)

Awesomesauce (F1)

Batiatus (F1)

BigPhil (F1)

Bipolar (F1)

Blexus (F1)

BobaPhett (F1)

Bobi (F1)

BodEinwohner17 (F1)

Boomer (F1)

Brocalys (F1)

Bubbles123 (F1)

Burwell21 (F1)

BuzzLyseyear (F1)

ByChance (F1)

Byougenkin (F1)

Cabrinians (F1)

CaptainTrips (F1)

Cerasum (F1)

Che8 (F1)

Chuckly (F1)

Clifton (F1)

Coco12 (F1)

Cornucopia (F1)

Daenerys (F1)

Dante (F1)

DaWorst (F1)

DeadP (F1)

DillTech15 (F1)

DirtMcgirt (F1)

DLane (F1)

Donkeykong (F1)

Doomphist (F1)

Dorothy (F1)

DotProduct (F1)

Doug (F1)

Drago (F1)

DRBy19 (F1)

Eish (F1)

EleanorGeorge (F1)

Emma (F1)

Empress (F1)

Enby (F1)

Eradicator (F1)

Estave1 (F1)

Fancypants (F1)

Filuzino (F1)

Firehouse51 (F1)

Flathead (F1)

Florinda (F1)

Frankie (F1)

Fruitloop (F1)

Galactic (F1)

Gandalph (F1)

Geralt (F1)

GigiOuiOui (F1)

Girafales (F1)

Girr (F1)

Gorge (F1)

GUmbie (F1)

Hades (F1)

Hamulus (F1)

Harley (F1)

Hegedechwinu (F1)

Hlubikazi (F1)

Ibhubesi (F1)

Inventum (F1)

IrishSherpFalk (F1)

JalFarm20 (F1)

James (F1)

Job42 (F1)

JoeyJr (F1)

Juice456 (F1)

Kenuha5 (F1)

Kersh (F1)

Kimberlium (F1)

KingMidas (F1)

Kingsley (F1)

Koella (F1)

Krakatau (F1)

KristaRAM (F1)

LastJedi (F1)

Latretium (F1)

Leozinho (F1)

Leperchaun (F1)

LilMoolah (F1)

Lizziana (F1)

Llama (F1)

Llij (F1)

Lorde (F1)

Madiba (F1)

MadMen (F1)

Mahavrat (F1)

Mandlovu (F1)

Mantra (F1)

Martik (F1)

Mattes (F1)

Melissauren88 (F1)

MilanaBonita (F1)

MilleniumForce (F1)

MinionDave (F1)

Minnie (F1)

Misha28 (F1)

MisterCuddles (F1)

Modragons (F1)

Moonbeam (F1)

Mova (F1)

Mozy (F1)

Mutaforma13 (F1)

Nimbo (F1)

Nitzel (F1)

Nivrat (F1)

NormanBulbieJr (F1)

Ochi17 (F1)

OfUltron (F1)

Ogopogo (F1)

OldBen (F1)

OlympiaSaint (F1)

Ovechkin (F1)

OwlsT2W (F1)

Pacc40 (F1)

Phanphagia (F1)

PHappiness (F1)

Phasih (F1)

Phatniss (F1)

Piper2020 (F1)

Pippy (F1)

Plumbus (F1)

PMC (F1)

Poenanya (F1)

Polka14 (F1)

Pollywog (F1)

PopTart (F1)

Priscilla (F1)

QuickMath (F1)

Quico (F1)

Ramsey (F1)

Rita (F1)

RitaG (F1)

Rockne (F1)

RockyHorror (F1)

Royals2015 (F1)

Ruby (F1)

Saal (F1)

Sabbb (F1)

Sandalphon (F1)

Sarma624 (F1)

Sassafras (F1)

SassyB (F1)

Scottish (F1)

Seabastian (F1)

Seagreen (F1)

SG4 (F1)

Shauna1 (F1)

ShiLan (F1)

SimranZ1 (F1)

SiSi (F1)

Sparkdehlily (F1)

Spartacus (F1)

Spikelee (F1)

Spoonbill (F1)

StAnnes (F1)

Strokeseat (F1)

SuperGrey (F1)

SwagPigglett (F1)

Taj (F1)

TDanisky (F1)

TootsiePop (F1)

Tootsieroll (F1)

Tweety (F1)

UncleRicky (F1)

Velveteen (F1)

Veteran (F1)

VRedHorse (F1)

Wachhund (F1)

Wee (F1)

Whatsapiecost (F1)

Whouxphf (F1)

WillSterrel (F1)

XFactor (F1)

Yorick (F1)

Zerg (F1)

Zizzle (F1)

Avani (F2)

Che9d (F2)

Demsculpinboyz (F2)

Jabbawokkie (F2)

Yoshi (F2)

Zapner (F2)

Squirty (F3)

Renaud18 (F4)

TChen (F4)

ThetaBob (F4)

Cornie (F5)

Annotating InstitutionUniversity of Pittsburgh
Annotation StatusBeing Annotated (Expected completion by 5/1/2022)
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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Madiba_Draft_1

Madiba_Draft_2

Madiba_Draft_3

Madiba_Draft_4

Madiba_Draft_5

Madiba_Draft_6

Madiba_Draft_7

Madiba_Draft_8

Madiba_Draft_9

Madiba_Draft_10

Madiba_Draft_11

Madiba_Draft_12

Madiba_Draft_13

Madiba_Draft_14

Madiba_Draft_15

Madiba_Draft_16

Madiba_Draft_17

Madiba_Draft_18

Madiba_Draft_19

Madiba_Draft_20

Madiba_Draft_21

Madiba_Draft_22

Madiba_Draft_23

Madiba_Draft_24

Madiba_Draft_25

Madiba_Draft_26

Madiba_Draft_27

Madiba_Draft_28

Madiba_Draft_29

Madiba_Draft_30

Madiba_Draft_31

Madiba_Draft_32

Madiba_Draft_33

Madiba_Draft_34

Madiba_Draft_35

Madiba_Draft_36

Madiba_Draft_37

Madiba_Draft_38

Madiba_Draft_39

Madiba_Draft_40

Madiba_Draft_41

Madiba_Draft_42

Madiba_Draft_43

Madiba_Draft_44

Madiba_Draft_45

Madiba_Draft_46

Madiba_Draft_47

Madiba_Draft_48

Madiba_Draft_49

Madiba_Draft_50

Madiba_Draft_51

Madiba_Draft_52

Madiba_Draft_53

Madiba_Draft_54

Madiba_Draft_55

Madiba_Draft_56

Madiba_Draft_57

Madiba_Draft_58

Madiba_Draft_59

Madiba_Draft_60

Madiba_Draft_61

Madiba_Draft_62

Madiba_Draft_63

Madiba_Draft_64

Madiba_Draft_65

Madiba_Draft_66

Madiba_Draft_67

Madiba_Draft_68

Madiba_Draft_69

Madiba_Draft_70

Madiba_Draft_71

Madiba_Draft_72

Madiba_Draft_73

Madiba_Draft_74

Madiba_Draft_75

Madiba_Draft_76

Madiba_Draft_77

Madiba_Draft_78

Madiba_Draft_79

Madiba_Draft_80

Madiba_Draft_81

Madiba_Draft_82

Madiba_Draft_83

Madiba_Draft_84

Madiba_Draft_85

Madiba_Draft_86

Madiba_Draft_87

Madiba_Draft_88

Madiba_Draft_89

Madiba_Draft_90

Madiba_Draft_91

Madiba_Draft_92

Madiba_Draft_93

Madiba_Draft_94

Madiba_Draft_95

Madiba_Draft_96

Madiba_Draft_97

Madiba_Draft_98

Madiba_Draft_99

Madiba_Draft_100

Madiba_Draft_101

Madiba_Draft_102

Madiba_Draft_103

Madiba_Draft_104

Madiba_Draft_105

Publication Info
Uploaded to GenBank?No
GenBank AccessionNone yet
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 96
Pitt Freezer Box Grid# C2
Available Files
Plaque PictureDownload
EM PictureDownload