Detailed Information for Phage Ovechkin |
Discovery Information |
Isolation Host | Mycobacterium smegmatis mc²155 |
Found By | Sarah Brusko |
Year Found | 2010 |
Location Found | Richmond, VA USA |
Finding Institution | Virginia Commonwealth University |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | Yes |
Isolation Temperature | Not entered |
GPS Coordinates | 37.552266 N, 77.454375 W Map |
Discovery Notes | a fairly dry sample of soil, roots, and mulch taken from a small shrub garden located outside of a church, 4-6 inches below the surface, at approximately 75°F in early September 2010 |
Sequencing Information |
Sequencing Complete? | Yes |
Date Sequencing Completed | Jun 25, 2012 |
Genome length (bp) | 58338 |
Character of genome ends | 3' Sticky Overhang |
Overhang Length | 10 bases |
Overhang Sequence | CGGAAGGCGC |
GC Content | 62.0% |
Fasta file available? | Yes: Download fasta file |
Characterization |
Cluster | F |
Subcluster | F1 |
Cluster Life Cycle | Temperate |
Other Cluster Members |
|
Annotating Institution | Unknown or unassigned |
Annotation Status | In GenBank |
Plaque Notes | Plaques as small as 0.2 mm and as large as 4.0 mm. Some are pinpoints (about 0.6 mm in diameter). Others may be broad, comet/fan tails either beside or overlapping a central, pinpoint clearing (0.2-0.8 mm in diameter). Others may be thin, closed (or only partially closed) halos or rings around a central, pinpoint clearing (0.2-0.8 mm in diameter). |
Morphotype | Siphoviridae |
Number of Genes | 106 |
Has been Phamerated? | Yes |
Gene List |
|
Submitted Annotation in DNA Master Format | Download |
Author List | Download |
Annotation Cover Sheet | Download |
Publication Info |
Uploaded to GenBank? | Yes |
GenBank Accession | KR824843 |
Refseq Number | None yet |
Published in Paper | Pope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity |
Archiving Info |
Archiving status |
Archived |
SEA Designator |
2010VACUovechkinSAB |
SEA Lysate Titer |
3.7e9 |
Pitt Freezer Box# |
19 |
Pitt Freezer Box Grid# |
78 |
Available Files |
Plaque Picture | Download |
EM Picture | Download |