Mycobacterium phage Polka14
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Detailed Information for Phage Polka14
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Former namesFreckles
Found ByUnavailable
Year Found2014
Location Found USA
Finding InstitutionUniversity of Kansas
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Unknown
Isolation TemperatureNot entered
GPS Coordinates38.96 N, 95.24917 W Map
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 27, 2015
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage163
Genome length (bp)58758
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCGGAAGGCGC
GC Content61.4%
Fasta file available?Yes: Download fasta file
Characterization
ClusterF
SubclusterF1
Cluster Life CycleTemperate
Other Cluster Members

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Renaud18 (None)

Alexphander (F1)

ArcusAngelus (F1)

Ardmore (F1)

Awesomesauce (F1)

Batiatus (F1)

BigPhil (F1)

Bipolar (F1)

Blexus (F1)

BobaPhett (F1)

Bobi (F1)

BodEinwohner17 (F1)

Boomer (F1)

Brocalys (F1)

Bubbles123 (F1)

Burwell21 (F1)

BuzzLyseyear (F1)

ByChance (F1)

Byougenkin (F1)

Cabrinians (F1)

CaptainTrips (F1)

Cerasum (F1)

Che8 (F1)

Chuckly (F1)

Clifton (F1)

Cornucopia (F1)

Daenerys (F1)

Dante (F1)

DaWorst (F1)

DeadP (F1)

DillTech15 (F1)

DirtMcgirt (F1)

DLane (F1)

Donkeykong (F1)

Doomphist (F1)

Dorothy (F1)

DotProduct (F1)

Doug (F1)

Drago (F1)

DRBy19 (F1)

Eish (F1)

EleanorGeorge (F1)

Emma (F1)

Empress (F1)

Enby (F1)

Estave1 (F1)

Fancypants (F1)

Filuzino (F1)

Firehouse51 (F1)

Flathead (F1)

Florinda (F1)

Frankie (F1)

Fruitloop (F1)

Galactic (F1)

Geralt (F1)

Girafales (F1)

Girr (F1)

Gorge (F1)

GUmbie (F1)

Hades (F1)

Hamulus (F1)

Harley (F1)

Hegedechwinu (F1)

Ibhubesi (F1)

Inventum (F1)

IrishSherpFalk (F1)

James (F1)

Job42 (F1)

JoeyJr (F1)

Juice456 (F1)

Kenuha5 (F1)

Kersh (F1)

Kimberlium (F1)

KingMidas (F1)

Kingsley (F1)

Koella (F1)

Krakatau (F1)

KristaRAM (F1)

LastJedi (F1)

Latretium (F1)

LilMoolah (F1)

Lizziana (F1)

Llama (F1)

Llij (F1)

Lorde (F1)

Mahavrat (F1)

Mantra (F1)

Mattes (F1)

Melissauren88 (F1)

MilleniumForce (F1)

MinionDave (F1)

Minnie (F1)

Misha28 (F1)

MisterCuddles (F1)

Modragons (F1)

Mozy (F1)

Mutaforma13 (F1)

Nimbo (F1)

Nitzel (F1)

Nivrat (F1)

NormanBulbieJr (F1)

Ochi17 (F1)

OfUltron (F1)

Ogopogo (F1)

OldBen (F1)

OlympiaSaint (F1)

Ovechkin (F1)

OwlsT2W (F1)

Pacc40 (F1)

Phanphagia (F1)

PHappiness (F1)

Phasih (F1)

Phatniss (F1)

Piper2020 (F1)

Pippy (F1)

Plumbus (F1)

PMC (F1)

Poenanya (F1)

Polka14 (F1)

Pollywog (F1)

PopTart (F1)

Priscilla (F1)

QuickMath (F1)

Quico (F1)

Ramsey (F1)

RitaG (F1)

RockyHorror (F1)

Royals2015 (F1)

Ruby (F1)

Saal (F1)

Sandalphon (F1)

SassyB (F1)

Scottish (F1)

Seabastian (F1)

Seagreen (F1)

SG4 (F1)

Shauna1 (F1)

ShiLan (F1)

SimranZ1 (F1)

SiSi (F1)

Sparkdehlily (F1)

Spartacus (F1)

Spikelee (F1)

Spoonbill (F1)

StAnnes (F1)

Strokeseat (F1)

SuperGrey (F1)

SwagPigglett (F1)

Taj (F1)

TDanisky (F1)

TootsiePop (F1)

Tweety (F1)

UncleRicky (F1)

Velveteen (F1)

Veteran (F1)

Wachhund (F1)

Wee (F1)

Whouxphf (F1)

WillSterrel (F1)

XFactor (F1)

Zerg (F1)

Avani (F2)

Che9d (F2)

Demsculpinboyz (F2)

Jabbawokkie (F2)

Yoshi (F2)

Zapner (F2)

Squirty (F3)

TChen (F4)

ThetaBob (F4)

Cornie (F5)

Annotating InstitutionUniversity of Kansas
Annotation StatusIn GenBank
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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Polka14_1
(terminase small subunit)

Polka14_2
(terminase large subunit)

Polka14_3
(portal protein)

Polka14_4
(capsid maturation protease)

Polka14_5
(scaffolding protein)

Polka14_6
(major capsid protein)

Polka14_7
(head-to-tail adaptor)

Polka14_8
(head-to-tail stopper)

Polka14_9

Polka14_10
(tail terminator)

Polka14_11
(major tail protein)

Polka14_12
(tail assembly chaperone)

Polka14_13
(tail assembly chaperone)

Polka14_14
(HNH endonuclease)

Polka14_15
(tape measure protein)

Polka14_16
(minor tail protein)

Polka14_17
(minor tail protein)

Polka14_18
(minor tail protein)

Polka14_19
(minor tail protein)

Polka14_20
(minor tail protein)

Polka14_21
(minor tail protein)

Polka14_22

Polka14_23

Polka14_24

Polka14_25

Polka14_26
(helix-turn-helix DNA binding domain protein)

Polka14_27

Polka14_28

Polka14_29

Polka14_30

Polka14_31
(lysin A)

Polka14_32
(lysin B)

Polka14_33
(holin)

Polka14_34

Polka14_35

Polka14_36
(DNA polymerase III subunit)

Polka14_37

Polka14_38

Polka14_39

Polka14_40

Polka14_41
(excise)

Polka14_42
(integrase)

Polka14_43

Polka14_44
(immunity repressor)

Polka14_45
(Cro protein)

Polka14_46

Polka14_47
(excise)

Polka14_48

Polka14_49

Polka14_50

Polka14_51

Polka14_52

Polka14_53

Polka14_54

Polka14_55
(WhiB family transcription factor)

Polka14_56

Polka14_57
(WhiB family transcription factor)

Polka14_58
(helix-turn-helix DNA binding domain protein)

Polka14_59

Polka14_60

Polka14_61

Polka14_62
(RecA-like DNA recombinase)

Polka14_63

Polka14_64
(HNH endonuclease)

Polka14_65
(DNA methylase)

Polka14_66

Polka14_67
(DNA methylase)

Polka14_68

Polka14_69

Polka14_70

Polka14_71

Polka14_72
(exonuclease)

Polka14_73

Polka14_74
(DNA methylase)

Polka14_75

Polka14_76

Polka14_77

Polka14_78
(DNA methylase)

Polka14_79

Polka14_80

Polka14_81

Polka14_82

Polka14_83

Polka14_84

Polka14_85

Polka14_86

Polka14_87

Polka14_88

Polka14_89

Polka14_90

Polka14_91

Polka14_92

Polka14_93

Polka14_94

Polka14_95

Polka14_96

Polka14_97

Polka14_98
(helix-turn-helix DNA binding domain protein)

Polka14_99

Polka14_100

Polka14_101

Polka14_102

Polka14_103

Polka14_104

Polka14_105
(galactosyltransferase)

Polka14_106

Polka14_107
(glycosyltransferase)

Polka14_108
(HNH endonuclease)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMK875792
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 12
Pitt Freezer Box Grid# D8
Available Files
GenBank File for PhameratorDownload