Mycobacterium phage Ogopogo
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Detailed Information for Phage Ogopogo
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByKaylee Nicholson
Year Found2008
Location FoundSanta Cruz, CA USA
Finding InstitutionUniversity of California, Santa Cruz
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates37.00015 N, 122.048317 W Map
Discovery NotesTaken from Mud/Stream sediments, depth ~1inch, 70-75°F, at a shaded, mildly cool, redwood forest stream in Pogonip Park, Santa Cruz
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedMar 14, 2012
Genome length (bp)56867
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCCGGTGGCAT
GC Content61.1%
Fasta file available?Yes: Download fasta file
Characterization
ClusterF
SubclusterF1
Cluster Life CycleTemperate
Other Cluster Members

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AbbyNormal (None)

Grib (None)

IchabodCrane (None)

Jiminy (None)

Kishmeesh (None)

KitCat (None)

MightyMorph (None)

Puck (None)

Renaud18 (None)

Sargento (None)

WIVsmall1220 (None)

Alexphander (F1)

Anaxagorus (F1)

Ant1Dodson (F1)

ArcusAngelus (F1)

Ardmore (F1)

Arienne (F1)

Asmart (F1)

Awesomesauce (F1)

BabytheFifth (F1)

Barson (F1)

Batiatus (F1)

BigPhil (F1)

Bipolar (F1)

Blexus (F1)

BobaPhett (F1)

Bobi (F1)

BodEinwohner17 (F1)

BoomCrackaPop (F1)

Boomer (F1)

Braemar (F1)

Brocalys (F1)

Bubbles123 (F1)

Burwell21 (F1)

BuzzLyseyear (F1)

ByChance (F1)

Byougenkin (F1)

Cabrinians (F1)

Cakepop (F1)

CaptainTrips (F1)

Cerasum (F1)

Che8 (F1)

Chhibber (F1)

Chikondi (F1)

Chuckly (F1)

Clifton (F1)

Clover (F1)

CoolGuy (F1)

Cornucopia (F1)

Daenerys (F1)

Danda (F1)

Dante (F1)

DaWorst (F1)

DCrust15 (F1)

DeadP (F1)

Desmond (F1)

DillTech15 (F1)

DirtMcgirt (F1)

DLane (F1)

Docouto (F1)

Dorothy (F1)

DotProduct (F1)

Drago (F1)

DRBy19 (F1)

Eish (F1)

EleanorGeorge (F1)

Emma (F1)

Empress (F1)

Enby (F1)

Estave1 (F1)

Estella (F1)

Fancypants (F1)

Filuzino (F1)

Firehouse51 (F1)

Flathead (F1)

Florinda (F1)

Frankie (F1)

Freddie4 (F1)

Fruitloop (F1)

FunOne (F1)

Galactic (F1)

Gardregs (F1)

Gendisarray (F1)

Genesis (F1)

Geralt (F1)

Girafales (F1)

Girr (F1)

Gorge (F1)

GreatPumpkin (F1)

GUmbie (F1)

Hades (F1)

Hamulus (F1)

Harley (F1)

Hegedechwinu (F1)

Ibhubesi (F1)

Inventum (F1)

IrishSherpFalk (F1)

James (F1)

Job42 (F1)

JoeyJr (F1)

Judylove (F1)

Juice456 (F1)

Kalikimaka (F1)

Katya (F1)

Kenuha5 (F1)

Kersh (F1)

Kimberlium (F1)

KingMidas (F1)

Kingsley (F1)

Koella (F1)

Krakatau (F1)

KristaRAM (F1)

Latretium (F1)

LillyLatzon (F1)

LilMoolah (F1)

Lizziana (F1)

Llama (F1)

Llij (F1)

Lorde (F1)

Lysinator (F1)

MacDrage (F1)

Mahavrat (F1)

Mantra (F1)

Mattes (F1)

McDiddy (F1)

Melissauren88 (F1)

MerrillCO18 (F1)

Mille (F1)

MilleniumForce (F1)

MinionDave (F1)

Minnie (F1)

Misha28 (F1)

MisterCuddles (F1)

Modragons (F1)

Mozy (F1)

Ms6 (F1)

Mutaforma13 (F1)

Myosotis (F1)

Nemain (F1)

Nimbo (F1)

Nitzel (F1)

Nivrat (F1)

Noodle (F1)

NormanBulbieJr (F1)

Ochi17 (F1)

OfUltron (F1)

Ogopogo (F1)

OldBen (F1)

OlympiaSaint (F1)

Ovechkin (F1)

OwlsT2W (F1)

Pacc40 (F1)

Peanut21s (F1)

Phabio (F1)

PHappiness (F1)

Phasih (F1)

Phatniss (F1)

PhrankthaTank (F1)

Piper2020 (F1)

Pippy (F1)

Plackberry (F1)

Plumbus (F1)

PMC (F1)

Poenanya (F1)

Polka14 (F1)

Pollywog (F1)

PopTart (F1)

Priscilla (F1)

Prometheus (F1)

QuickMath (F1)

Quico (F1)

Ramsey (F1)

RitaG (F1)

Rocktrap (F1)

RockyHorror (F1)

Rombolo (F1)

Royals2015 (F1)

Ruby (F1)

S2Kari (F1)

S2TSquared (F1)

Saal (F1)

SaltyMike (F1)

Sandalphon (F1)

SassyB (F1)

Scottish (F1)

Seagreen (F1)

SG4 (F1)

Sharpshooter (F1)

Shauna1 (F1)

SherL (F1)

ShiLan (F1)

SimranZ1 (F1)

SiSi (F1)

Sparkdehlily (F1)

Spartacus (F1)

Spikelee (F1)

Spoonbill (F1)

Strokeseat (F1)

SuperGrey (F1)

SwagPigglett (F1)

Taj (F1)

Taus (F1)

TDanisky (F1)

TonaldTDrump (F1)

TootsiePop (F1)

Tweety (F1)

UncleRicky (F1)

Velveteen (F1)

Wachhund (F1)

Wee (F1)

WheatBerry18 (F1)

Whouxphf (F1)

WillSterrel (F1)

WIVsmall (F1)

XFactor (F1)

Zerg (F1)

Avani (F2)

Che9d (F2)

Demsculpinboyz (F2)

Jabbawokkie (F2)

Yoshi (F2)

Zapner (F2)

Squirty (F3)

TChen (F4)

ThetaBob (F4)

Cornie (F5)

Annotation StatusIn GenBank
Plaque Notes2mm (low concentration), 0.5mm (high concentration)/ Clear, circular center with outer cloudy halo that forms (in low concentration stocks) a “tear drop” shape/ Incubated 48 hours at 37°C
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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Ogopogo_1

Ogopogo_2
(HNH endonuclease)

Ogopogo_3

Ogopogo_4
(terminase)

Ogopogo_5
(portal protein)

Ogopogo_6
(capsid maturation protease)

Ogopogo_7
(scaffolding protein)

Ogopogo_8
(major capsid protein)

Ogopogo_9

Ogopogo_10
(head-to-tail connector protein)

Ogopogo_11
(head-to-tail connector protein)

Ogopogo_12

Ogopogo_13

Ogopogo_14
(major tail protein)

Ogopogo_15
(tail assembly chaperone)

Ogopogo_16
(tail assembly chaperone)

Ogopogo_17
(tapemeasure protein)

Ogopogo_18
(minor tail protein)

Ogopogo_19
(minor tail protein)

Ogopogo_20
(minor tail protein)

Ogopogo_21
(minor tail protein)

Ogopogo_22
(minor tail protein)

Ogopogo_23

Ogopogo_24

Ogopogo_25

Ogopogo_26

Ogopogo_27

Ogopogo_28

Ogopogo_29

Ogopogo_30
(lysin A)

Ogopogo_31
(lysin B)

Ogopogo_32
(holin)

Ogopogo_33

Ogopogo_34

Ogopogo_35
(DnaQ-like exonuclease)

Ogopogo_36

Ogopogo_37

Ogopogo_38

Ogopogo_39

Ogopogo_40

Ogopogo_41

Ogopogo_42

Ogopogo_43

Ogopogo_44
(integrase)

Ogopogo_45
(immunity repressor)

Ogopogo_46

Ogopogo_47
(HTH DNA binding domain protein)

Ogopogo_48

Ogopogo_49

Ogopogo_50

Ogopogo_51

Ogopogo_52

Ogopogo_53

Ogopogo_54

Ogopogo_55

Ogopogo_56

Ogopogo_57

Ogopogo_58

Ogopogo_59

Ogopogo_60

Ogopogo_61

Ogopogo_62

Ogopogo_63

Ogopogo_64

Ogopogo_65

Ogopogo_66

Ogopogo_67

Ogopogo_68

Ogopogo_69
(AAA-ATPase)

Ogopogo_70

Ogopogo_71

Ogopogo_72

Ogopogo_73

Ogopogo_74

Ogopogo_75

Ogopogo_76

Ogopogo_77

Ogopogo_78
(DNA methylase)

Ogopogo_79

Ogopogo_80

Ogopogo_81

Ogopogo_82

Ogopogo_83

Ogopogo_84

Ogopogo_85

Ogopogo_86

Ogopogo_87

Ogopogo_88

Ogopogo_89

Ogopogo_90

Ogopogo_91

Ogopogo_92

Ogopogo_93

Ogopogo_94

Ogopogo_95

Ogopogo_96

Ogopogo_97

Ogopogo_98

Ogopogo_99

Ogopogo_100

Ogopogo_101

Ogopogo_102

Ogopogo_103

Ogopogo_104

Ogopogo_105
(polypeptide N-acetylgalactosaminyl transferase)

Ogopogo_106

Ogopogo_107

Ogopogo_108

Ogopogo_109

Ogopogo_110

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMG925354
Refseq NumberNone yet
Published in PaperPope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity
Archiving Info
Archiving status Archived
SEA Designator 2008UCSCOgoPogoKN
SEA Lysate Titer 6.85e10
Pitt Freezer Box# 6
Pitt Freezer Box Grid# 69
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
Final DNAMaster FileDownload
GenBank File for PhameratorDownload