The Actinobacteriophage Database

Mycobacterium phage Avani

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Detailed Information for Phage Avani
Discovery Information
Isolation Host	Mycobacterium smegmatis mc²155
Found By	Stacey Heaver
Year Found	2011
Location Found	Gettysburg, PA USA
Finding Institution	Gettysburg College
Program	Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?	Yes
Isolation Temperature	Not entered
GPS Coordinates	39.834000 N, 77.235659 W Map
Discovery Notes	Soil sample collected from damp soil on a grassy lawn; up to 3 cm depth; 80° F
Sequencing Information
Sequencing Complete?	Yes
Date Sequencing Completed	Feb 1, 2012
Approximate Shotgun Coverage	410
Genome length (bp)	54470
Character of genome ends	3' Sticky Overhang
Overhang Length	10 bases
Overhang Sequence	CTCAGGGCAT
GC Content	61.0%
Fasta file available?	Yes: Download fasta file
Characterization
Cluster	F
Subcluster	F2
Cluster Life Cycle	Temperate
Other Cluster Members	Click to View Blarby (None) MulchSalad (None) Akhila (F1) Alexphander (F1) AlpineSix (F1) ArcusAngelus (F1) Ardmore (F1) Aubs (F1) Awesomesauce (F1) Batiatus (F1) Beakin (F1) BigPhil (F1) Bipolar (F1) Blexus (F1) BlueCrab (F1) BobaPhett (F1) Bobi (F1) BodEinwohner17 (F1) Boomer (F1) Brocalys (F1) Bubbles123 (F1) Burwell21 (F1) BuzzLyseyear (F1) ByChance (F1) Byougenkin (F1) Cabrinians (F1) CaptainTrips (F1) Cerasum (F1) Che8 (F1) Chevrolet (F1) ChickenDinner (F1) Chuckly (F1) Clifton (F1) Coco12 (F1) Cornucopia (F1) Crumble (F1) DaddyRickover (F1) Daenerys (F1) Dante (F1) DaWorst (F1) DeadP (F1) Deb65 (F1) DillTech15 (F1) DirtMcgirt (F1) DLane (F1) DocMcStuffins (F1) Donkeykong (F1) Doomphist (F1) Dorothy (F1) DosHalletts (F1) DotProduct (F1) Doug (F1) Drago (F1) DRBy19 (F1) Eish (F1) EleanorGeorge (F1) Emma (F1) Empress (F1) Enby (F1) Eradicator (F1) Estave1 (F1) Fancypants (F1) Fastidio (F1) Filuzino (F1) Firehouse51 (F1) Flathead (F1) Florinda (F1) Frankie (F1) FreddyB (F1) Fruitloop (F1) Galactic (F1) Gandalph (F1) Geralt (F1) GigiOuiOui (F1) Girafales (F1) Girr (F1) Gorge (F1) GUmbie (F1) Guppsters (F1) Hades (F1) Hamulus (F1) Harley (F1) Hegedechwinu (F1) Hlubikazi (F1) Ibhubesi (F1) IbOuu (F1) Inventum (F1) IrishSherpFalk (F1) JalFarm20 (F1) James (F1) Jarcob (F1) Jinglebell (F1) Job42 (F1) JoeyJr (F1) Juice456 (F1) Juniper1 (F1) Karhdo (F1) Kenuha5 (F1) Kersh (F1) Kimberlium (F1) KingMidas (F1) Kingsley (F1) Koella (F1) Krakatau (F1) KristaRAM (F1) LastJedi (F1) Latretium (F1) Leozinho (F1) Leperchaun (F1) LilMoolah (F1) LittleShirley (F1) Lizziana (F1) Llama (F1) Llij (F1) Lorde (F1) LunaBlu (F1) Madiba (F1) MadMen (F1) Mahavrat (F1) Mandlovu (F1) Mantra (F1) Maravista (F1) Marker (F1) Martik (F1) Mattes (F1) Melissauren88 (F1) MilanaBonita (F1) MilleniumForce (F1) MinionDave (F1) Minnie (F1) Misha28 (F1) MisterCuddles (F1) Modragons (F1) Moonbeam (F1) Mova (F1) Mozy (F1) Ms6 (F1) Mutaforma13 (F1) Nimbo (F1) Nitzel (F1) Nivrat (F1) NormanBulbieJr (F1) Ochi17 (F1) OfUltron (F1) Ogopogo (F1) Oksu (F1) OldBen (F1) OlympiaSaint (F1) Ovechkin (F1) OwlsT2W (F1) Pacc40 (F1) Phalconet (F1) Phanphagia (F1) PHappiness (F1) Phasih (F1) Phatniss (F1) PhesterPhotato (F1) Philus (F1) Piper2020 (F1) Pippy (F1) Plumbus (F1) PMC (F1) Poenanya (F1) Polka14 (F1) Pollywog (F1) PopTart (F1) Priscilla (F1) QuickMath (F1) Quico (F1) Radiance (F1) Ramsey (F1) RedBird (F1) Rialto (F1) Rita (F1) RitaG (F1) Rockne (F1) RockyHorror (F1) Royals2015 (F1) Ruby (F1) Saal (F1) Sabbb (F1) Sandalphon (F1) Sarma624 (F1) Sassafras (F1) SassyB (F1) Scottish (F1) Seabastian (F1) Seagreen (F1) SG4 (F1) Shauna1 (F1) ShiLan (F1) ShowerHandel (F1) ShroomBoi (F1) SimranZ1 (F1) SiSi (F1) Sparkdehlily (F1) Spartacus (F1) Spikelee (F1) Spoonbill (F1) StAnnes (F1) Stap (F1) Starcevich (F1) Strokeseat (F1) SuperGrey (F1) SwagPigglett (F1) Taj (F1) TDanisky (F1) TootsiePop (F1) Tootsieroll (F1) Totinger (F1) Tweety (F1) UncleRicky (F1) Velveteen (F1) Veteran (F1) VRedHorse (F1) Wachhund (F1) Wee (F1) Whatsapiecost (F1) Whouxphf (F1) WillSterrel (F1) XFactor (F1) Yorick (F1) Zerg (F1) Zizzle (F1) Avani (F2) Che9d (F2) Demsculpinboyz (F2) Jabbawokkie (F2) Soul22 (F2) Yoshi (F2) Zapner (F2) Squirty (F3) LunaStella (F4) Renaud18 (F4) TChen (F4) ThetaBob (F4) Cornie (F5)
Annotating Institution	Unknown or unassigned
Annotation Status	In GenBank
Plaque Notes	After 48 hours at 37° C plaques range in size from 0.56-1.7mm. Average plaque size is 1.2 mm. As time progresses plaques form turbid regions extending from the clear plaque boundaries.
Morphotype	Siphoviridae
Number of Genes	107
Has been Phamerated?	Yes
Gene List	Click to View Avani_1 (HNH endonuclease) Avani_2 Avani_3 Avani_4 (portal protein) Avani_5 (MuF-like minor capsid protein) Avani_6 (scaffolding protein) Avani_7 (major capsid protein) Avani_8 Avani_9 (head-to-tail adaptor) Avani_10 Avani_11 Avani_12 Avani_13 Avani_14 (major tail protein) Avani_15 (tail assembly chaperone) Avani_16 (tail assembly chaperone) Avani_17 (tape measure protein) Avani_18 (minor tail protein) Avani_19 (minor tail protein) Avani_20 (minor tail protein) Avani_21 Avani_22 (minor tail protein) Avani_23 (minor tail protein) Avani_24 (minor tail protein) Avani_25 (minor tail protein) Avani_26 Avani_27 Avani_28 (helix-turn-helix DNA binding protein) Avani_29 Avani_30 Avani_31 Avani_32 Avani_33 Avani_34 Avani_35 (lysin A) Avani_36 (lysin B) Avani_37 Avani_38 Avani_39 Avani_40 Avani_41 Avani_42 Avani_43 Avani_44 Avani_45 Avani_46 Avani_47 Avani_48 Avani_49 Avani_50 (tyrosine integrase) Avani_51 Avani_52 Avani_53 (immunity repressor) Avani_54 (helix-turn-helix DNA binding protein) Avani_55 Avani_56 Avani_57 Avani_58 Avani_59 Avani_60 Avani_61 Avani_62 Avani_63 Avani_64 Avani_65 (WhiB family transcription factor) Avani_66 Avani_67 (WhiB family transcription factor) Avani_68 (helix-turn-helix DNA binding protein) Avani_69 Avani_70 Avani_71 Avani_72 Avani_73 (HNH endonuclease) Avani_74 Avani_75 (DNA methylase) Avani_76 Avani_77 Avani_78 Avani_79 Avani_80 (G-I-Y Y-I-G endonuclease) Avani_81 Avani_82 Avani_83 Avani_84 Avani_85 Avani_86 Avani_87 (histidine triad nucleotide binding protein) Avani_88 Avani_89 Avani_90 Avani_91 Avani_92 Avani_93 Avani_94 Avani_95 Avani_96 Avani_97 Avani_98 Avani_99 Avani_100 Avani_101 Avani_102 Avani_103 Avani_104 Avani_105 (glycosyltransferase) Avani_106 (glycosyltransferase) Avani_107 (glycosyltransferase)
Publication Info
Uploaded to GenBank?	Yes
GenBank Accession	JQ809702
Refseq Number	NC_023698
Published in Paper	Pope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity
Archiving Info
Archiving status	Archived
SEA Designator	2011GTTYavaniSH
Pitt Freezer Box#	24
Pitt Freezer Box Grid#	35
Available Files
Plaque Picture	Download
Restriction Digest Picture	Download
EM Picture	Download
Final DNAMaster File	Download

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