| Detailed Information for Phage Byougenkin |
| Discovery Information |
| Isolation Host | Mycobacterium smegmatis mc²155 |
| Former names | Byougakin |
| Found By | Brandon Aquino |
| Year Found | 2015 |
| Location Found | Miami, FL USA |
| Finding Institution | Florida International University |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Unknown |
| Isolation Temperature | Not entered |
| GPS Coordinates | 25.42 N, 80.17 W Map |
| Naming Notes | Romanization of the Japanese word 病原菌「びょうげんきん」meaning: virus, germ, pathogen. |
| Sequencing Information |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jan 7, 2016 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Sequencer Used | Illumina MiSeq |
| Read Type | Single-end reads |
| Read Length | 150 bp |
| Approximate Shotgun Coverage | 1746 |
| Genome length (bp) | 54685 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 10 bases |
| Overhang Sequence | CGGACGGCGC |
| GC Content | 61.4% |
| Sequencing Notes | at position 18621 33% of reads have an A instead of consensus G
at position 18711 32% of reads have a G instead of consensus A |
| Fasta file available? | Yes: Download fasta file |
| Characterization |
| Cluster | F |
| Subcluster | F1 |
| Cluster Life Cycle | Temperate |
| Other Cluster Members |
|
| Annotating Institution | Florida International University |
| Annotation Status | In GenBank |
| Plaque Notes | From 3rd purification,
Small (around 1 mm diameter), clear plaques with cloudy circumference. |
| Morphotype | Siphoviridae |
| Number of Genes | 101 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
|
| Submitted Annotation in DNA Master Format | Download |
| Submitted Minimal DNA Master File | Download |
| Author List | Download |
| Annotation Cover Sheet | Download |
| Publication Info |
| Uploaded to GenBank? | Yes |
| GenBank Accession | MH155866 |
| Refseq Number | None yet |
| Archiving Info |
| Archiving status |
Archived |
| Pitt Freezer Box# |
26 |
| Pitt Freezer Box Grid# |
F2 |
| Available Files |
| Plaque Picture | Download |
| EM Picture | Download |
| GenBank File for Phamerator | Download |
