The Actinobacteriophage Database

Mycobacterium phage Che8

Locally BLAST this genome

Run GeneMarkS

Run GeneMark
(smeg)

Run GeneMark
(TB_H37Rv)

Know something about this phage that we don't? Modify its data.

Detailed Information for Phage Che8
Discovery Information
Isolation Host	Mycobacterium smegmatis mc²155
Found By	V. Kumar
Year Found	2002
Location Found	Chennai, India
Finding Institution	Albert Einstein College of Medicine
Program	Unavailable
From enriched soil sample?	Unknown
Isolation Temperature	Not entered
GPS Coordinates	13.068108 N, 80.279503 E Map
Sequencing Information
Sequencing Complete?	Yes
Date Sequencing Completed	Jul 5, 2002
Sequencing Facility	Pittsburgh Bacteriophage Institute
Shotgun Sequencing Method	Illumina Sequencing
Approximate Shotgun Coverage	852
Genome length (bp)	59472
Character of genome ends	3' Sticky Overhang
Overhang Length	10 bases
GC Content	61.3%
Sequencing Notes	This phage was originally sequenced in 2002 using Sanger sequencing. In 2022, it was resequenced by Illumina and the new sequence was found to have 12 differences from the original. After looking at the original's data, it's likely that those 12 differences were due to sequencing errors in the original sample rather than mutations acquired over time. Therefore, the sequence of Che8 was updated in January 2023 here on PhagesDB as well as in GenBank to be the newer, correct sequence. Gene numbers were maintained in the new annotation to match the previous annotations.
Fasta file available?	Yes: Download fasta file
Characterization
Cluster	F
Subcluster	F1
Cluster Life Cycle	Temperate
Other Cluster Members	Click to View Blarby (None) MulchSalad (None) Akhila (F1) Alexphander (F1) AlpineSix (F1) ArcusAngelus (F1) Ardmore (F1) Aubs (F1) Awesomesauce (F1) Batiatus (F1) Beakin (F1) BigPhil (F1) Bipolar (F1) Blexus (F1) BlueCrab (F1) BobaPhett (F1) Bobi (F1) BodEinwohner17 (F1) Boomer (F1) Brocalys (F1) Bubbles123 (F1) Burwell21 (F1) BuzzLyseyear (F1) ByChance (F1) Byougenkin (F1) Cabrinians (F1) CaptainTrips (F1) Cerasum (F1) Che8 (F1) Chevrolet (F1) ChickenDinner (F1) Chuckly (F1) Clifton (F1) Coco12 (F1) Cornucopia (F1) Crumble (F1) DaddyRickover (F1) Daenerys (F1) Dante (F1) DaWorst (F1) DeadP (F1) Deb65 (F1) DillTech15 (F1) DirtMcgirt (F1) DLane (F1) DocMcStuffins (F1) Donkeykong (F1) Doomphist (F1) Dorothy (F1) DosHalletts (F1) DotProduct (F1) Doug (F1) Drago (F1) DRBy19 (F1) Eish (F1) EleanorGeorge (F1) Emma (F1) Empress (F1) Enby (F1) Eradicator (F1) Estave1 (F1) Fancypants (F1) Fastidio (F1) Filuzino (F1) Firehouse51 (F1) Flathead (F1) Florinda (F1) Frankie (F1) FreddyB (F1) Fruitloop (F1) Galactic (F1) Gandalph (F1) Geralt (F1) GigiOuiOui (F1) Girafales (F1) Girr (F1) Gorge (F1) GUmbie (F1) Guppsters (F1) Hades (F1) Hamulus (F1) Harley (F1) Hegedechwinu (F1) Hlubikazi (F1) Ibhubesi (F1) IbOuu (F1) Inventum (F1) IrishSherpFalk (F1) JalFarm20 (F1) James (F1) Jarcob (F1) Jinglebell (F1) Job42 (F1) JoeyJr (F1) Juice456 (F1) Juniper1 (F1) Karhdo (F1) Kenuha5 (F1) Kersh (F1) Kimberlium (F1) KingMidas (F1) Kingsley (F1) Koella (F1) Krakatau (F1) KristaRAM (F1) LastJedi (F1) Latretium (F1) Leozinho (F1) Leperchaun (F1) LilMoolah (F1) LittleShirley (F1) Lizziana (F1) Llama (F1) Llij (F1) Lorde (F1) LunaBlu (F1) Madiba (F1) MadMen (F1) Mahavrat (F1) Mandlovu (F1) Mantra (F1) Maravista (F1) Marker (F1) Martik (F1) Mattes (F1) Melissauren88 (F1) MilanaBonita (F1) MilleniumForce (F1) MinionDave (F1) Minnie (F1) Misha28 (F1) MisterCuddles (F1) Modragons (F1) Moonbeam (F1) Mova (F1) Mozy (F1) Ms6 (F1) Mutaforma13 (F1) Nimbo (F1) Nitzel (F1) Nivrat (F1) NormanBulbieJr (F1) Ochi17 (F1) OfUltron (F1) Ogopogo (F1) Oksu (F1) OldBen (F1) OlympiaSaint (F1) Ovechkin (F1) OwlsT2W (F1) Pacc40 (F1) Phalconet (F1) Phanphagia (F1) PHappiness (F1) Phasih (F1) Phatniss (F1) PhesterPhotato (F1) Philus (F1) Piper2020 (F1) Pippy (F1) Plumbus (F1) PMC (F1) Poenanya (F1) Polka14 (F1) Pollywog (F1) PopTart (F1) Priscilla (F1) QuickMath (F1) Quico (F1) Radiance (F1) Ramsey (F1) RedBird (F1) Rialto (F1) Rita (F1) RitaG (F1) Rockne (F1) RockyHorror (F1) Royals2015 (F1) Ruby (F1) Saal (F1) Sabbb (F1) Sandalphon (F1) Sarma624 (F1) Sassafras (F1) SassyB (F1) Scottish (F1) Seabastian (F1) Seagreen (F1) SG4 (F1) Shauna1 (F1) ShiLan (F1) ShowerHandel (F1) ShroomBoi (F1) SimranZ1 (F1) SiSi (F1) Sparkdehlily (F1) Spartacus (F1) Spikelee (F1) Spoonbill (F1) StAnnes (F1) Stap (F1) Starcevich (F1) Strokeseat (F1) SuperGrey (F1) SwagPigglett (F1) Taj (F1) TDanisky (F1) TootsiePop (F1) Tootsieroll (F1) Totinger (F1) Tweety (F1) UncleRicky (F1) Velveteen (F1) Veteran (F1) VRedHorse (F1) Wachhund (F1) Wee (F1) Whatsapiecost (F1) Whouxphf (F1) WillSterrel (F1) XFactor (F1) Yorick (F1) Zerg (F1) Zizzle (F1) Avani (F2) Che9d (F2) Demsculpinboyz (F2) Jabbawokkie (F2) Soul22 (F2) Yoshi (F2) Zapner (F2) Squirty (F3) LunaStella (F4) Renaud18 (F4) TChen (F4) ThetaBob (F4) Cornie (F5)
Annotating Institution	Unknown or unassigned
Annotation Status	In GenBank
Morphotype	Siphoviridae
Number of Genes	112
Has been Phamerated?	Yes
Gene List	Click to View Che8_1 (terminase small subunit) Che8_2 (terminase large subunit) Che8_3 (portal protein) Che8_4 (capsid maturation protease) Che8_5 (scaffolding protein) Che8_6 (major capsid protein) Che8_7 (head-to-tail adaptor) Che8_8 (head-to-tail stopper) Che8_9 Che8_10 (tail terminator) Che8_11 (major tail protein) Che8_12 (tail assembly chaperone) Che8_13 (tail assembly chaperone) Che8_14 Che8_15 (minor tail protein) Che8_16 (minor tail protein) Che8_17 Che8_18 (minor tail protein) Che8_20 (minor tail protein) Che8_21 (minor tail protein) Che8_22 Che8_23 Che8_24 (minor tail protein) Che8_25 Che8_26 (helix-turn-helix DNA binding domain protein) Che8_27 Che8_28 Che8_29 Che8_30 Che8_31 Che8_32 (lysin A) Che8_33 (lysin B) Che8_34 (holin) Che8_35 (glycoprotein and membrane protein domain protein) Che8_36 Che8_37 (DnaQ-like DNA polymerase III subunit) Che8_38 Che8_39 Che8_40 Che8_41 Che8_42 Che8_43 Che8_44 (helix-turn-helix DNA binding domain protein) Che8_45 Che8_46 (tyrosine integrase) Che8_47 Che8_48 (immunity repressor) Che8_113 Che8_49 (antirepressor) Che8_50 Che8_51 Che8_114 Che8_52 (excise) Che8_53 Che8_54 Che8_55 Che8_56 Che8_57 Che8_58 Che8_59 Che8_60 Che8_61 Che8_62 (WhiB family transcription factor) Che8_63 (helix-turn-helix DNA binding domain protein) Che8_64 (helix-turn-helix DNA binding domain protein) Che8_65 (WhiB family transcription factor) Che8_66 Che8_67 Che8_68 Che8_69 Che8_70 Che8_71 Che8_72 Che8_73 Che8_74 Che8_75 Che8_76 Che8_77 Che8_78 (RepA-like replication initiator) Che8_79 (helicase loader) Che8_80 Che8_115 Che8_81 Che8_116 Che8_82 Che8_83 Che8_84 Che8_85 Che8_86 Che8_87 Che8_88 Che8_89 (MPME1 protein) Che8_90 Che8_91 Che8_92 Che8_93 Che8_94 Che8_95 Che8_96 Che8_97 Che8_98 Che8_99 Che8_100 Che8_101 (exonuclease domain protein) Che8_102 Che8_103 Che8_104 Che8_105 Che8_106 Che8_107 Che8_108 (glycosyltransferase) Che8_109 (glycosyltransferase) Che8_110 (glycosyltransferase) Che8_111 Che8_112 (HNH endonuclease)
Publication Info
Uploaded to GenBank?	Yes
GenBank Accession	AY129330
Refseq Number	NC_004680
Archiving Info
Archiving status	Archived
Pitt Freezer Box#	1
Pitt Freezer Box Grid#	D10
Available Files
Plaque Picture	Download
Virtual Digest Picture	Download
EM Picture	Download
GenBank File for Phamerator	Download

Click to View

Click to View