The Actinobacteriophage Database | Phage DocMcStuffins

Mycobacterium phage DocMcStuffins

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Detailed Information for Phage DocMcStuffins
Discovery Information
Isolation Host	Mycobacterium smegmatis mc²155
Found By	Zephaniah ansah
Year Found	2023
Location Found	Williamburg, VA United States of America
Finding Institution	College of William & Mary
Program	Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?	Unknown
Isolation Temperature	37°C
GPS Coordinates	37.269 N, 76.719 W Map
Discovery Notes	The color of the soil was a dark brown, similar to the color of wet cardboard. Its texture resembled that of porridge.
Naming Notes	"I was torn between Sofia The First or Doc McStuffins, but Doc McStuffins holds a special place in my heart. As a character, Doc McStuffins was kind, caring, determined, and a great problem solver. She was a role model throughout my childhood. 'The Doc is in and she'll fix you up. If you're a toy, then you're in luck. It's OK; don't be afraid, the Doc really knows her stuff!'"
Sequencing Information
Sequencing Complete?	Yes
Date Sequencing Completed	Jan 23, 2024
Sequencing Facility	Pittsburgh Bacteriophage Institute
Shotgun Sequencing Method	Illumina Sequencing
Approximate Shotgun Coverage	1122
Genome length (bp)	58159
Character of genome ends	3' Sticky Overhang
Overhang Length	10 bases
Overhang Sequence	CCGAAGGCAT
GC Content	62.7%
Fasta file available?	Yes: Download fasta file
Characterization
Cluster	F
Subcluster	F1
Cluster Life Cycle	Temperate
Other Cluster Members	Click to View Blarby (None) MulchSalad (None) Akhila (F1) Alexphander (F1) AlpineSix (F1) ArcusAngelus (F1) Ardmore (F1) Aubs (F1) Awesomesauce (F1) Batiatus (F1) Beakin (F1) BigPhil (F1) Bipolar (F1) Blexus (F1) BlueCrab (F1) BobaPhett (F1) Bobi (F1) BodEinwohner17 (F1) Boomer (F1) Brocalys (F1) Bubbles123 (F1) Burwell21 (F1) BuzzLyseyear (F1) ByChance (F1) Byougenkin (F1) Cabrinians (F1) CaptainTrips (F1) Cerasum (F1) Che8 (F1) Chevrolet (F1) ChickenDinner (F1) Chuckly (F1) Clifton (F1) Coco12 (F1) Cornucopia (F1) Crumble (F1) DaddyRickover (F1) Daenerys (F1) Dante (F1) DaWorst (F1) DeadP (F1) Deb65 (F1) DillTech15 (F1) DirtMcgirt (F1) DLane (F1) DocMcStuffins (F1) Donkeykong (F1) Doomphist (F1) Dorothy (F1) DosHalletts (F1) DotProduct (F1) Doug (F1) Drago (F1) DRBy19 (F1) Eish (F1) EleanorGeorge (F1) Emma (F1) Empress (F1) Enby (F1) Eradicator (F1) Estave1 (F1) Fancypants (F1) Fastidio (F1) Filuzino (F1) Firehouse51 (F1) Flathead (F1) Florinda (F1) Frankie (F1) FreddyB (F1) Fruitloop (F1) Galactic (F1) Gandalph (F1) Geralt (F1) GigiOuiOui (F1) Girafales (F1) Girr (F1) Gorge (F1) GUmbie (F1) Guppsters (F1) Hades (F1) Hamulus (F1) Harley (F1) Hegedechwinu (F1) Hlubikazi (F1) Ibhubesi (F1) IbOuu (F1) IMpilo (F1) Inventum (F1) IrishSherpFalk (F1) JalFarm20 (F1) James (F1) Jarcob (F1) Jinglebell (F1) Job42 (F1) JoeyJr (F1) Juice456 (F1) Juniper1 (F1) Karhdo (F1) Kenuha5 (F1) Kersh (F1) Kimberlium (F1) KingMidas (F1) Kingsley (F1) Koella (F1) Krakatau (F1) KristaRAM (F1) LastJedi (F1) Latretium (F1) Leozinho (F1) Leperchaun (F1) LilMoolah (F1) LittleShirley (F1) Lizziana (F1) Llama (F1) Llij (F1) Lorde (F1) LunaBlu (F1) Madiba (F1) MadMen (F1) Mahavrat (F1) Mandlovu (F1) Mantra (F1) Maravista (F1) Marker (F1) Martik (F1) Mattes (F1) Melissauren88 (F1) MilanaBonita (F1) MilleniumForce (F1) MinionDave (F1) Minnie (F1) Misha28 (F1) MisterCuddles (F1) Modragons (F1) Moonbeam (F1) Mova (F1) Mozy (F1) Ms6 (F1) MulchExplorer (F1) Mutaforma13 (F1) Nimbo (F1) Nitzel (F1) Nivrat (F1) NormanBulbieJr (F1) Ochi17 (F1) OfUltron (F1) Ogopogo (F1) Oksu (F1) OldBen (F1) OlympiaSaint (F1) Ovechkin (F1) OwlsT2W (F1) Pacc40 (F1) Phalconet (F1) Phanphagia (F1) PHappiness (F1) Phasih (F1) Phatniss (F1) PhesterPhotato (F1) Philus (F1) Piper2020 (F1) Pippy (F1) Plumbus (F1) PMC (F1) Poenanya (F1) Polka14 (F1) Pollywog (F1) PopTart (F1) Priscilla (F1) QuickMath (F1) Quico (F1) Radiance (F1) Ramsey (F1) RedBird (F1) Rialto (F1) Rita (F1) RitaG (F1) Rockne (F1) RockyHorror (F1) Royals2015 (F1) Ruby (F1) Saal (F1) Sabbb (F1) Sandalphon (F1) Sarma624 (F1) Sassafras (F1) SassyB (F1) Scottish (F1) Seabastian (F1) Seagreen (F1) SG4 (F1) Shauna1 (F1) ShiLan (F1) ShowerHandel (F1) ShroomBoi (F1) SimranZ1 (F1) SiSi (F1) Sparkdehlily (F1) Spartacus (F1) Spikelee (F1) Spoonbill (F1) StAnnes (F1) Stap (F1) Starcevich (F1) Strokeseat (F1) SuperGrey (F1) SwagPigglett (F1) Taj (F1) TDanisky (F1) TootsiePop (F1) Tootsieroll (F1) Totinger (F1) Tweety (F1) UncleRicky (F1) Velveteen (F1) Veteran (F1) VRedHorse (F1) Wachhund (F1) Wee (F1) Whatsapiecost (F1) Whouxphf (F1) WillSterrel (F1) XFactor (F1) Yorick (F1) Zerg (F1) Zizzle (F1) Avani (F2) Che9d (F2) Demsculpinboyz (F2) Jabbawokkie (F2) Soul22 (F2) Yoshi (F2) Zapner (F2) Squirty (F3) LunaStella (F4) Renaud18 (F4) TChen (F4) ThetaBob (F4) Cornie (F5) Toron (F6)
Annotating Institution	College of William & Mary
Annotation Status	In GenBank
Plaque Notes	Small , circular, clear plaques
Morphotype	Siphoviridae
Number of Genes	91
Number of tRNAs	0
Number of tmRNAs	0
Has been Phamerated?	Yes
Gene List	Click to View DocMcStuffins_1 (HNH endonuclease) DocMcStuffins_2 (terminase, small subunit) DocMcStuffins_3 (terminase, large subunit) DocMcStuffins_4 (portal protein) DocMcStuffins_5 (capsid maturation protease) DocMcStuffins_6 (scaffolding protein) DocMcStuffins_7 (major capsid protein) DocMcStuffins_8 (head-to-tail adaptor) DocMcStuffins_9 (head-to-tail stopper) DocMcStuffins_10 DocMcStuffins_11 (tail terminator) DocMcStuffins_12 (major tail protein) DocMcStuffins_13 (tail assembly chaperone) DocMcStuffins_14 (tail assembly chaperone) DocMcStuffins_15 (tape measure protein) DocMcStuffins_16 (minor tail protein) DocMcStuffins_17 (minor tail protein) DocMcStuffins_18 (minor tail protein) DocMcStuffins_19 (minor tail protein) DocMcStuffins_20 (minor tail protein) DocMcStuffins_21 (minor tail protein) DocMcStuffins_22 DocMcStuffins_23 (HNH endonuclease) DocMcStuffins_24 DocMcStuffins_25 DocMcStuffins_26 DocMcStuffins_27 (helix-turn-helix DNA binding domain) DocMcStuffins_28 DocMcStuffins_29 DocMcStuffins_30 DocMcStuffins_31 DocMcStuffins_32 (lysin A) DocMcStuffins_33 (lysin B) DocMcStuffins_34 (holin) DocMcStuffins_35 DocMcStuffins_36 DocMcStuffins_37 (DnaQ-like (DNA polymerase III subunit)) DocMcStuffins_38 DocMcStuffins_39 DocMcStuffins_40 DocMcStuffins_41 (tyrosine integrase) DocMcStuffins_42 DocMcStuffins_43 (immunity repressor) DocMcStuffins_44 (Cro (control of repressor's operator)) DocMcStuffins_45 (antirepressor) DocMcStuffins_46 DocMcStuffins_47 DocMcStuffins_48 DocMcStuffins_49 DocMcStuffins_50 DocMcStuffins_51 DocMcStuffins_52 DocMcStuffins_53 DocMcStuffins_54 DocMcStuffins_55 DocMcStuffins_56 DocMcStuffins_57 DocMcStuffins_58 DocMcStuffins_59 (WhiB family transcription factor) DocMcStuffins_60 DocMcStuffins_61 DocMcStuffins_62 (mycobacteriophage mobile element 1 (MPME 1)) DocMcStuffins_63 DocMcStuffins_64 DocMcStuffins_65 DocMcStuffins_66 (Cas4 family exonuclease) DocMcStuffins_67 DocMcStuffins_68 DocMcStuffins_69 DocMcStuffins_70 (RusA-like resolvase) DocMcStuffins_71 DocMcStuffins_72 DocMcStuffins_73 (DNA methyltransferase) DocMcStuffins_74 (HNH endonuclease) DocMcStuffins_75 (DNA methyltransferase) DocMcStuffins_76 DocMcStuffins_77 DocMcStuffins_78 DocMcStuffins_79 DocMcStuffins_80 DocMcStuffins_81 DocMcStuffins_82 DocMcStuffins_83 DocMcStuffins_84 (helix-turn-helix DNA binding domain) DocMcStuffins_85 DocMcStuffins_86 DocMcStuffins_87 DocMcStuffins_88 DocMcStuffins_89 (glycosyltransferase) DocMcStuffins_90 DocMcStuffins_91 (glycosyltransferase)
Submitted Annotation in DNA Master Format	Download
Submitted Minimal DNA Master File	Download
Author List	Download
Annotation Cover Sheet	Download
Publication Info
Uploaded to GenBank?	Yes
GenBank Accession	PQ184804
Refseq Number	None yet
Archiving Info
Archiving status	Archived
Pitt Freezer Box#	186
Pitt Freezer Box Grid#	B9
Available Files
GenBank File for Phamerator	Download

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