Mycobacterium phage NewHope4
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Detailed Information for Phage NewHope4
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByKatelynn Barton
Year Found2024
Location FoundColbert, AL United States
Finding InstitutionBrigham Young University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature74°C
GPS Coordinates34.60813 N, 87.62755 W Map
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedFeb 10, 2025
Sequencing FacilityCD Genomics
Shotgun Sequencing MethodIllumina
Sequencer UsedIllumina NovaSeq X Plus
Read TypePaired-end reads
Read Length150 bp
Approximate Shotgun Coverage5566
Genome length (bp)57409
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCGGAAGGCGC
GC Content61.5%
Fasta file available?Yes: Download fasta file
Characterization
ClusterF
SubclusterF1
Cluster Life CycleTemperate
Other Cluster Members

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Blarby (None)

Akhila (F1)

Alexphander (F1)

Aloeri (F1)

AlpineSix (F1)

ArcusAngelus (F1)

Ardmore (F1)

Aubs (F1)

Awesomesauce (F1)

Batiatus (F1)

Beakin (F1)

BigPhil (F1)

Bipolar (F1)

Blexus (F1)

BlueCrab (F1)

BobaPhett (F1)

Bobi (F1)

BodEinwohner17 (F1)

Boomer (F1)

Brocalys (F1)

Brookers (F1)

Brushbloom (F1)

Bubbles123 (F1)

Burwell21 (F1)

BuzzLyseyear (F1)

ByChance (F1)

Byougenkin (F1)

Cabrinians (F1)

CaptainTrips (F1)

Cerasum (F1)

Che8 (F1)

Cheesepuff (F1)

Chevrolet (F1)

ChickenDinner (F1)

Chuckly (F1)

Clifton (F1)

Coco12 (F1)

Corium (F1)

Cornucopia (F1)

Crumble (F1)

DaddyRickover (F1)

Daenerys (F1)

Dante (F1)

DaWorst (F1)

DeadP (F1)

Deb65 (F1)

DillTech15 (F1)

DirtMcgirt (F1)

DLane (F1)

DocMcStuffins (F1)

Donkeykong (F1)

Doomphist (F1)

DoRead (F1)

Dorothy (F1)

DosHalletts (F1)

DotProduct (F1)

Doug (F1)

Drago (F1)

DRBy19 (F1)

Eish (F1)

EleanorGeorge (F1)

EmiMonkey (F1)

Emma (F1)

Emmaloid (F1)

Empress (F1)

Enby (F1)

Eradicator (F1)

Estave1 (F1)

Fancypants (F1)

Fastidio (F1)

Filuzino (F1)

Firehouse51 (F1)

Flathead (F1)

Florinda (F1)

Frankie (F1)

FreddyB (F1)

Fruitloop (F1)

Galactic (F1)

Gandalph (F1)

Geralt (F1)

GigiOuiOui (F1)

Girafales (F1)

Girr (F1)

Gorge (F1)

Grimmer (F1)

GUmbie (F1)

Guppsters (F1)

Hades (F1)

Hamulus (F1)

Harley (F1)

Hegedechwinu (F1)

Hlubikazi (F1)

Ibhubesi (F1)

IbOuu (F1)

IMpilo (F1)

Inventum (F1)

IrishSherpFalk (F1)

JalFarm20 (F1)

James (F1)

Jant (F1)

Jarcob (F1)

Jinglebell (F1)

Job42 (F1)

JoeyJr (F1)

Juice456 (F1)

Juniper1 (F1)

Karhdo (F1)

Kenuha5 (F1)

Kersh (F1)

Kimberlium (F1)

KingJulian (F1)

KingMidas (F1)

Kingsley (F1)

Koella (F1)

Krakatau (F1)

KristaRAM (F1)

LastJedi (F1)

Latretium (F1)

Leozinho (F1)

Leperchaun (F1)

LilMoolah (F1)

LittleShirley (F1)

Lizziana (F1)

Llama (F1)

Llij (F1)

Lorde (F1)

LunaBlu (F1)

Madiba (F1)

MadMen (F1)

Mahavrat (F1)

Mandlovu (F1)

Mantra (F1)

Maravista (F1)

Marker (F1)

Martik (F1)

Mattes (F1)

Melissauren88 (F1)

MilanaBonita (F1)

MilleniumForce (F1)

MinionDave (F1)

Minnie (F1)

Misha28 (F1)

MisterCuddles (F1)

Modragons (F1)

Moonbeam (F1)

Mova (F1)

Mozy (F1)

Ms6 (F1)

MulchExplorer (F1)

Mutaforma13 (F1)

Mwanjiwa (F1)

NewHope4 (F1)

Nimbo (F1)

Nitzel (F1)

Nivrat (F1)

NormanBulbieJr (F1)

Ochi17 (F1)

OfUltron (F1)

Ogopogo (F1)

Oksu (F1)

OldBen (F1)

OlympiaSaint (F1)

Ovechkin (F1)

OwlsT2W (F1)

Pacc40 (F1)

Peridot (F1)

Phalconet (F1)

Phanphagia (F1)

PHappiness (F1)

Phasih (F1)

Phatniss (F1)

PhesterPhotato (F1)

Philus (F1)

PhlipPhlop (F1)

Piper2020 (F1)

Pippy (F1)

Plumbus (F1)

PMC (F1)

Poenanya (F1)

Polka14 (F1)

Pollywog (F1)

Polo2Bam (F1)

PopTart (F1)

Priscilla (F1)

QuickMath (F1)

Quico (F1)

Radiance (F1)

Ramsey (F1)

RedBird (F1)

Rialto (F1)

Rita (F1)

RitaG (F1)

Rockne (F1)

RockyHorror (F1)

Royals2015 (F1)

Ruby (F1)

Saal (F1)

Sabbb (F1)

Sandalphon (F1)

Sarma624 (F1)

Sassafras (F1)

SassyB (F1)

Scottish (F1)

Seabastian (F1)

Seagreen (F1)

SG4 (F1)

Shauna1 (F1)

ShiLan (F1)

ShowerHandel (F1)

ShroomBoi (F1)

SimranZ1 (F1)

SiSi (F1)

Slim (F1)

Sparkdehlily (F1)

Spartacus (F1)

Spikelee (F1)

Spoonbill (F1)

StAnnes (F1)

Stap (F1)

Starcevich (F1)

Strokeseat (F1)

SuperGrey (F1)

SwagPigglett (F1)

Taj (F1)

Tchotchke (F1)

TDanisky (F1)

TootsiePop (F1)

Tootsieroll (F1)

Topiatin (F1)

Totinger (F1)

Tweety (F1)

UncleRicky (F1)

Velveteen (F1)

Veteran (F1)

Violac (F1)

Vivum (F1)

VRedHorse (F1)

Wachhund (F1)

Wee (F1)

Whatsapiecost (F1)

Whouxphf (F1)

WillSterrel (F1)

XFactor (F1)

Yorick (F1)

Zerg (F1)

Zizzle (F1)

Avani (F2)

Che9d (F2)

Demsculpinboyz (F2)

Jabbawokkie (F2)

SilverChicken (F2)

Soul22 (F2)

Yoshi (F2)

Zapner (F2)

Squirty (F3)

LunaStella (F4)

Renaud18 (F4)

TChen (F4)

ThetaBob (F4)

Cornie (F5)

Toron (F6)

MulchSalad (F7)

Annotating InstitutionBrigham Young University
Annotation StatusIn GenBank
Plaque NotesA medium sized plaque, about 4 mm in diameter
MorphotypeSiphoviridae
Number of Genes112
Number of tRNAs0
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

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NewHope4_1
(terminase, small subunit)

NewHope4_2
(terminase, large subunit)

NewHope4_3
(portal protein)

NewHope4_4
(capsid maturation protease)

NewHope4_5
(scaffolding protein)

NewHope4_6
(major capsid protein)

NewHope4_7
(head-to-tail adaptor)

NewHope4_8
(head-to-tail stopper)

NewHope4_9

NewHope4_10
(tail terminator)

NewHope4_11
(major tail protein)

NewHope4_12
(tail assembly chaperone)

NewHope4_13
(tail assembly chaperone)

NewHope4_14
(tape measure protein)

NewHope4_15
(Dit)

NewHope4_16
(baseplate hub)

NewHope4_17
(minor tail protein)

NewHope4_18
(tail tip cage)

NewHope4_19
(tail spike)

NewHope4_20
(tail wing base)

NewHope4_21

NewHope4_22

NewHope4_23
(minor tail protein)

NewHope4_24
(tail collar)

NewHope4_25
(minor tail protein)

NewHope4_26
(tail wing brush)

NewHope4_27
(helix-turn-helix DNA binding domain)

NewHope4_28

NewHope4_29

NewHope4_30

NewHope4_31

NewHope4_32
(lysin A, glycosyl hydrolase domain)

NewHope4_33
(HNH endonuclease)

NewHope4_34
(lysin A, N-acetylmuramoyl-L-alanine amidase domain)

NewHope4_35
(lysin B)

NewHope4_36
(holin)

NewHope4_37

NewHope4_38

NewHope4_39
(DnaQ-like (DNA polymerase III subunit))

NewHope4_40

NewHope4_41

NewHope4_42

NewHope4_43
(immunity repressor)

NewHope4_44

NewHope4_45
(tyrosine integrase)

NewHope4_46

NewHope4_47
(immunity repressor)

NewHope4_48
(Cro (control of repressor's operator))

NewHope4_49
(antirepressor)

NewHope4_50

NewHope4_51

NewHope4_52

NewHope4_53
(excise)

NewHope4_54

NewHope4_55

NewHope4_56

NewHope4_57

NewHope4_58
(WhiB family transcription factor)

NewHope4_59
(helix-turn-helix DNA binding domain)

NewHope4_60
(WhiB family transcription)

NewHope4_61
(helix-turn-helix DNA binding domain)

NewHope4_62

NewHope4_63

NewHope4_64

NewHope4_65
(ASCE ATPase)

NewHope4_66

NewHope4_67
(HNH endonuclease)

NewHope4_68

NewHope4_69
(DNA methyltransferase)

NewHope4_70

NewHope4_71

NewHope4_72

NewHope4_73

NewHope4_74

NewHope4_75
(helicase loader)

NewHope4_76

NewHope4_77

NewHope4_78

NewHope4_79

NewHope4_80

NewHope4_81

NewHope4_82

NewHope4_83

NewHope4_84

NewHope4_85

NewHope4_86

NewHope4_87
(mycobacteriophage mobile element 1 (MPME 1))

NewHope4_88

NewHope4_89

NewHope4_90

NewHope4_91

NewHope4_92

NewHope4_93

NewHope4_94

NewHope4_95

NewHope4_96

NewHope4_97

NewHope4_98

NewHope4_99
(helix-turn-helix DNA binding domain, MerR-like)

NewHope4_100

NewHope4_101

NewHope4_102

NewHope4_103

NewHope4_104

NewHope4_105

NewHope4_106

NewHope4_107

NewHope4_108
(glycosyltransferase)

NewHope4_109

NewHope4_110
(serine/threonine kinase)

NewHope4_111
(glucosyltransferase)

NewHope4_112
(HNH endonuclease)

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionPX136947
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 209
Pitt Freezer Box Grid# A12
Available Files
Plaque PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload