The Actinobacteriophage Database

Mycobacterium phage Ogopogo

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Detailed Information for Phage Ogopogo
Discovery Information
Isolation Host	Mycobacterium smegmatis mc²155
Found By	Kaylee Nicholson
Year Found	2008
Location Found	Santa Cruz, CA USA
Finding Institution	University of California, Santa Cruz
Program	Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?	Yes
Isolation Temperature	Not entered
GPS Coordinates	37.00015 N, 122.048317 W Map
Discovery Notes	Taken from Mud/Stream sediments, depth ~1inch, 70-75°F, at a shaded, mildly cool, redwood forest stream in Pogonip Park, Santa Cruz
Sequencing Information
Sequencing Complete?	Yes
Date Sequencing Completed	Mar 14, 2012
Genome length (bp)	56867
Character of genome ends	3' Sticky Overhang
Overhang Length	10 bases
Overhang Sequence	CCGGTGGCAT
GC Content	61.1%
Fasta file available?	Yes: Download fasta file
Characterization
Cluster	F
Subcluster	F1
Cluster Life Cycle	Temperate
Other Cluster Members	Click to View Blarby (None) Akhila (F1) Alexphander (F1) Aloeri (F1) AlpineSix (F1) ArcusAngelus (F1) Ardmore (F1) Aubs (F1) Awesomesauce (F1) Batiatus (F1) Beakin (F1) BigPhil (F1) Bipolar (F1) Blexus (F1) BlueCrab (F1) BobaPhett (F1) Bobi (F1) BodEinwohner17 (F1) Boomer (F1) Brocalys (F1) Brookers (F1) Brushbloom (F1) Bubbles123 (F1) Burwell21 (F1) BuzzLyseyear (F1) ByChance (F1) Byougenkin (F1) Cabrinians (F1) CaptainTrips (F1) Cerasum (F1) Che8 (F1) Cheesepuff (F1) Chevrolet (F1) ChickenDinner (F1) Chuckly (F1) Clifton (F1) Coco12 (F1) Corium (F1) Cornucopia (F1) Crumble (F1) DaddyRickover (F1) Daenerys (F1) Dante (F1) DaWorst (F1) DeadP (F1) Deb65 (F1) DillTech15 (F1) DirtMcgirt (F1) DLane (F1) DocMcStuffins (F1) Donkeykong (F1) Doomphist (F1) DoRead (F1) Dorothy (F1) DosHalletts (F1) DotProduct (F1) Doug (F1) Drago (F1) DRBy19 (F1) Eish (F1) EleanorGeorge (F1) EmiMonkey (F1) Emma (F1) Emmaloid (F1) Empress (F1) Enby (F1) Eradicator (F1) Estave1 (F1) Fancypants (F1) Fastidio (F1) Filuzino (F1) Firehouse51 (F1) Flathead (F1) Florinda (F1) Frankie (F1) FreddyB (F1) Fruitloop (F1) Galactic (F1) Gandalph (F1) Geralt (F1) GigiOuiOui (F1) Girafales (F1) Girr (F1) Gorge (F1) Grimmer (F1) GUmbie (F1) Guppsters (F1) Hades (F1) Hamulus (F1) Harley (F1) Hegedechwinu (F1) Hlubikazi (F1) Ibhubesi (F1) IbOuu (F1) IMpilo (F1) Inventum (F1) IrishSherpFalk (F1) JalFarm20 (F1) James (F1) Jant (F1) Jarcob (F1) Jinglebell (F1) Job42 (F1) JoeyJr (F1) Juice456 (F1) Juniper1 (F1) Karhdo (F1) Kenuha5 (F1) Kersh (F1) Kimberlium (F1) KingJulian (F1) KingMidas (F1) Kingsley (F1) Koella (F1) Krakatau (F1) KristaRAM (F1) LastJedi (F1) Latretium (F1) Leozinho (F1) Leperchaun (F1) LilMoolah (F1) LittleShirley (F1) Lizziana (F1) Llama (F1) Llij (F1) Lorde (F1) LunaBlu (F1) Madiba (F1) MadMen (F1) Mahavrat (F1) Mandlovu (F1) Mantra (F1) Maravista (F1) Marker (F1) Martik (F1) Mattes (F1) Medindi (F1) Melissauren88 (F1) MilanaBonita (F1) MilleniumForce (F1) MinionDave (F1) Minnie (F1) Misha28 (F1) MisterCuddles (F1) Modragons (F1) Moonbeam (F1) Mova (F1) Mozy (F1) Ms6 (F1) MulchExplorer (F1) Mutaforma13 (F1) Mwanjiwa (F1) NewHope4 (F1) Nimbo (F1) Nitzel (F1) Nivrat (F1) NormanBulbieJr (F1) Ochi17 (F1) OfUltron (F1) Ogopogo (F1) Oksu (F1) OldBen (F1) OlympiaSaint (F1) Ovechkin (F1) OwlsT2W (F1) Pacc40 (F1) Peridot (F1) Phalconet (F1) Phanphagia (F1) PHappiness (F1) Phasih (F1) Phatniss (F1) PhesterPhotato (F1) Philus (F1) PhlipPhlop (F1) Piper2020 (F1) Pippy (F1) Plumbus (F1) PMC (F1) Poenanya (F1) Polka14 (F1) Pollywog (F1) Polo2Bam (F1) PopTart (F1) Priscilla (F1) QuickMath (F1) Quico (F1) Radiance (F1) Ramsey (F1) RedBird (F1) Rialto (F1) Rita (F1) RitaG (F1) Rockne (F1) RockyHorror (F1) Royals2015 (F1) Ruby (F1) Saal (F1) Sabbb (F1) Sandalphon (F1) Sarma624 (F1) Sassafras (F1) SassyB (F1) Scottish (F1) Seabastian (F1) Seagreen (F1) SG4 (F1) Shauna1 (F1) ShiLan (F1) ShowerHandel (F1) ShroomBoi (F1) SimranZ1 (F1) SiSi (F1) Slim (F1) Sparkdehlily (F1) Spartacus (F1) Spikelee (F1) Spoonbill (F1) StAnnes (F1) Stap (F1) Starcevich (F1) Strokeseat (F1) SuperGrey (F1) SwagPigglett (F1) Taj (F1) Tchotchke (F1) TDanisky (F1) TootsiePop (F1) Tootsieroll (F1) Topiatin (F1) Totinger (F1) Tweety (F1) UncleRicky (F1) Velveteen (F1) Veteran (F1) Violac (F1) Vivum (F1) VRedHorse (F1) Wachhund (F1) Wee (F1) Whatsapiecost (F1) Whouxphf (F1) WillSterrel (F1) XFactor (F1) Yorick (F1) Zerg (F1) Zizzle (F1) Avani (F2) Che9d (F2) Demsculpinboyz (F2) Jabbawokkie (F2) SilverChicken (F2) Soul22 (F2) Yoshi (F2) Zapner (F2) Squirty (F3) LunaStella (F4) Renaud18 (F4) TChen (F4) ThetaBob (F4) Cornie (F5) Toron (F6) MulchSalad (F7)
Annotating Institution	University of California, Santa Cruz
Annotation Status	In GenBank
Plaque Notes	2mm (low concentration), 0.5mm (high concentration)/ Clear, circular center with outer cloudy halo that forms (in low concentration stocks) a “tear drop” shape/ Incubated 48 hours at 37°C
Morphotype	Siphoviridae
Number of Genes	110
Number of tRNAs	0
Number of tmRNAs	0
Has been Phamerated?	Yes
Gene List	Click to View Ogopogo_1 Ogopogo_2 (HNH endonuclease) Ogopogo_3 Ogopogo_4 (terminase) Ogopogo_5 (portal protein) Ogopogo_6 (capsid maturation protease) Ogopogo_7 (scaffolding protein) Ogopogo_8 (major capsid protein) Ogopogo_9 Ogopogo_10 (head-to-tail adaptor) Ogopogo_11 (head-to-tail stopper) Ogopogo_12 Ogopogo_13 (tail terminator) Ogopogo_14 (major tail protein) Ogopogo_15 (tail assembly chaperone) Ogopogo_16 (tail assembly chaperone) Ogopogo_17 (tape measure protein) Ogopogo_18 (minor tail protein) Ogopogo_19 (minor tail protein) Ogopogo_20 (minor tail protein) Ogopogo_21 (minor tail protein) Ogopogo_22 (minor tail protein) Ogopogo_23 Ogopogo_24 Ogopogo_25 Ogopogo_26 Ogopogo_27 Ogopogo_28 Ogopogo_29 Ogopogo_30 (lysin A) Ogopogo_31 (lysin B) Ogopogo_32 (holin) Ogopogo_33 Ogopogo_34 Ogopogo_35 (DnaQ-like DNA polymerase III subunit) Ogopogo_36 Ogopogo_37 Ogopogo_38 Ogopogo_39 Ogopogo_40 Ogopogo_41 Ogopogo_42 Ogopogo_43 Ogopogo_44 (tyrosine integrase) Ogopogo_45 Ogopogo_46 Ogopogo_47 (HTH DNA binding domain protein) Ogopogo_48 Ogopogo_49 Ogopogo_50 Ogopogo_51 Ogopogo_52 Ogopogo_53 Ogopogo_54 Ogopogo_55 Ogopogo_56 Ogopogo_57 Ogopogo_58 Ogopogo_59 Ogopogo_60 Ogopogo_61 Ogopogo_62 Ogopogo_63 Ogopogo_64 Ogopogo_65 Ogopogo_66 Ogopogo_67 Ogopogo_68 Ogopogo_69 (AAA-ATPase) Ogopogo_70 Ogopogo_71 Ogopogo_72 Ogopogo_73 Ogopogo_74 Ogopogo_75 Ogopogo_76 Ogopogo_77 Ogopogo_78 (DNA methylase) Ogopogo_79 Ogopogo_80 Ogopogo_81 Ogopogo_82 Ogopogo_83 Ogopogo_84 Ogopogo_85 Ogopogo_86 Ogopogo_87 Ogopogo_88 Ogopogo_89 Ogopogo_90 Ogopogo_91 Ogopogo_92 Ogopogo_93 Ogopogo_94 Ogopogo_95 Ogopogo_96 Ogopogo_97 Ogopogo_98 Ogopogo_99 Ogopogo_100 Ogopogo_101 Ogopogo_102 Ogopogo_103 Ogopogo_104 Ogopogo_105 (polypeptide N-acetylgalactosaminyl transferase) Ogopogo_106 Ogopogo_107 Ogopogo_108 Ogopogo_109 Ogopogo_110
Submitted Minimal DNA Master File	Download
Publication Info
Uploaded to GenBank?	Yes
GenBank Accession	MG925354
Refseq Number	None yet
Published in Paper	Pope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity
Archiving Info
Archiving status	Archived
SEA Designator	2008UCSCOgoPogoKN
SEA Lysate Titer	6.85e10
Pitt Freezer Box#	6
Pitt Freezer Box Grid#	69
Available Files
Plaque Picture	Download
Restriction Digest Picture	Download
EM Picture	Download
Final DNAMaster File	Download
GenBank File for Phamerator	Download

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