Mycobacterium phage Piper2020
Know something about this phage that we don't? Modify its data.
Recently Added Phages
Clooza CharCharBinks AkronHammer Kern SuperBaseRecently Modified Phages
Dirtdonut Minderson TinyTillie SiltShady OolalaRecently Finished Phages
Liberone (GI) Neuvillette (FR) FatCactus (A20) Rossetti (L2) RoseMarie (None)Mycobacterium phage Piper2020
Know something about this phage that we don't? Modify its data.
| Detailed Information for Phage Piper2020 | |
| Discovery Information | |
| Isolation Host | Mycobacterium smegmatis mc²155 |
| Found By | Danielle Galli and Micaela Caron |
| Year Found | 2016 |
| Location Found | Melrose, MA USA |
| Finding Institution | Merrimack College |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | No |
| Isolation Temperature | Not entered |
| GPS Coordinates | 42.451333 N, 71.076333 W Map |
| Discovery Notes | The dirt sample that was tested was adopted from our Professor. It came from a tomato plant that was watered daily throughout the summer. |
| Naming Notes | Our phage that we made in class out of different materials was named Piper. Micaela and I thought that this was an adorable name so we decided to name our discovered phage Piper. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jan 10, 2017 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Sequencer Used | Illumina MiSeq |
| Read Type | Single-end reads |
| Read Length | 150 bp |
| Approximate Shotgun Coverage | 1883 |
| Genome length (bp) | 57703 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 10 bases |
| Overhang Sequence | CCGAAGGCAT |
| GC Content | 62.7% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | F |
| Subcluster | F1 |
| Cluster Life Cycle | Temperate |
| Other Cluster Members | |
| Annotating Institution | Merrimack College |
| Annotation Status | In GenBank |
| Plaque Notes | The plaques that we obtained during this experiment were small and clear. |
| Morphotype | Siphoviridae |
| Number of Genes | 98 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List | |
| Submitted Annotation in DNA Master Format | Download |
| Submitted Minimal DNA Master File | Download |
| Author List | Download |
| Annotation Cover Sheet | Download |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | MK494120 |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| SEA Lysate Titer | 6.3*10^10 |
| Pitt Freezer Box# | 73 |
| Pitt Freezer Box Grid# | H2 |
| Available Files | |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |
| EM Picture | Download |
| GenBank File for Phamerator | Download |