| Detailed Information for Phage ShiLan |
| Discovery Information |
| Isolation Host | Mycobacterium smegmatis mc²155 |
| Found By | Karen Kantor & Hao-yi Wang |
| Year Found | 2009 |
| Location Found | Richmond, VA USA |
| Finding Institution | Virginia Commonwealth University |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Unknown |
| Isolation Temperature | Not entered |
| GPS Coordinates | 37.690947 N, 77.663839 W Map |
| Discovery Notes | Isolated from kitchen worm bin, 71°F. |
| Sequencing Information |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Mar 9, 2011 |
| Genome length (bp) | 59794 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 10 bases |
| Overhang Sequence | CGGAAGGCGC |
| GC Content | 61.4% |
| Fasta file available? | Yes: Download fasta file |
| Characterization |
| Cluster | F |
| Subcluster | F1 |
| Cluster Life Cycle | Temperate |
| Other Cluster Members |
|
| Annotating Institution | Unknown or unassigned |
| Annotation Status | In GenBank |
| Plaque Notes | 1 mm, pinpoint clear plaques in spot-test, and at high concentration. 2-2.5 mm, clear plaques when well-isolated. |
| Morphotype | Siphoviridae |
| Number of Genes | 107 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
|
| Publication Info |
| Uploaded to GenBank? | Yes |
| GenBank Accession | JN020143 |
| Refseq Number | None yet |
| Published in Paper | Pope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity |
| Archiving Info |
| Archiving status |
Archived |
| SEA Designator |
2009VACUShiLanKKHW |
| SEA Lysate Titer |
unknown |
| Pitt Freezer Box# |
9 |
| Pitt Freezer Box Grid# |
78 |
| Available Files |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |
| EM Picture | Download |
