| Detailed Information for Phage Cabrinians |
| Discovery Information |
| Isolation Host | Mycobacterium smegmatis mc²155 |
| Found By | Mother Cabrini High School Students |
| Year Found | 2012 |
| Location Found | Manhattan, New York City, NY USA |
| Finding Institution | Cabrini University |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | 37°C |
| GPS Coordinates | 40.857999 N, 73.93562 W Map |
| Discovery Notes | Mycobacteriophage was found by Mother Cabrini High School students who participated in a 2012 Summer Research Camp at Cabrini College. Soil samples from all students were combined and enriched. Cabrinians was isolated using Mycobacterium phlei. It can infect Mycobacterium smegmatis. |
| Naming Notes | Named after Cabrini high school and Cabrini College. |
| Sequencing Information |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jan 13, 2013 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Ion Torrent Sequencing |
| Approximate Shotgun Coverage | 560 |
| Sanger Finishing Reactions | 10 |
| Genome length (bp) | 56669 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 10 bases |
| Overhang Sequence | CGGACGGCGC |
| GC Content | 61.2% |
| Fasta file available? | Yes: Download fasta file |
| Characterization |
| Cluster | F |
| Subcluster | F1 |
| Cluster Life Cycle | Temperate |
| Other Cluster Members |
|
| Annotating Institution | Unknown or unassigned |
| Annotation Status | In GenBank |
| Morphotype | Siphoviridae |
| Number of Genes | 101 |
| Has been Phamerated? | Yes |
| Gene List |
|
| Submitted Annotation in DNA Master Format | Download |
| Submitted Minimal DNA Master File | Download |
| Author List | Download |
| Annotation Cover Sheet | Download |
| Publication Info |
| Uploaded to GenBank? | Yes |
| GenBank Accession | KT895281 |
| Refseq Number | None yet |
| Published in Paper | Pope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity |
| Archiving Info |
| Archiving status |
Archived |
| SEA Designator |
Cabrini College |
| SEA Lysate Titer |
5.6E10 pfu/mL |
| Date of SEA Lysate Titering |
Aug 11, 2015 |
| Pitt Freezer Box# |
149 |
| Pitt Freezer Box Grid# |
B8 |
| Available Files |
| EM Picture | Download |