Mycobacterium phage Daenerys
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Detailed Information for Phage Daenerys
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByMegan Schlegelmilch
Year Found2012
Location FoundOakland in Pittsburgh, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates40.445116 N, 79.956442 W Map
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedMar 2, 2013
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIon Torrent Sequencing
Approximate Shotgun Coverage850
Sanger Finishing Reactions4
Genome length (bp)58043
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCGGACGGCGC
GC Content61.6%
Fasta file available?Yes: Download fasta file
Characterization
ClusterF
SubclusterF1
Cluster Life CycleTemperate
Other Cluster Members

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Blarby (None)

MulchSalad (None)

Akhila (F1)

Alexphander (F1)

AlpineSix (F1)

ArcusAngelus (F1)

Ardmore (F1)

Aubs (F1)

Awesomesauce (F1)

Batiatus (F1)

Beakin (F1)

BigPhil (F1)

Bipolar (F1)

Blexus (F1)

BlueCrab (F1)

BobaPhett (F1)

Bobi (F1)

BodEinwohner17 (F1)

Boomer (F1)

Brocalys (F1)

Bubbles123 (F1)

Burwell21 (F1)

BuzzLyseyear (F1)

ByChance (F1)

Byougenkin (F1)

Cabrinians (F1)

CaptainTrips (F1)

Cerasum (F1)

Che8 (F1)

Chevrolet (F1)

ChickenDinner (F1)

Chuckly (F1)

Clifton (F1)

Coco12 (F1)

Cornucopia (F1)

Crumble (F1)

DaddyRickover (F1)

Daenerys (F1)

Dante (F1)

DaWorst (F1)

DeadP (F1)

Deb65 (F1)

DillTech15 (F1)

DirtMcgirt (F1)

DLane (F1)

DocMcStuffins (F1)

Donkeykong (F1)

Doomphist (F1)

Dorothy (F1)

DosHalletts (F1)

DotProduct (F1)

Doug (F1)

Drago (F1)

DRBy19 (F1)

Eish (F1)

EleanorGeorge (F1)

Emma (F1)

Empress (F1)

Enby (F1)

Eradicator (F1)

Estave1 (F1)

Fancypants (F1)

Fastidio (F1)

Filuzino (F1)

Firehouse51 (F1)

Flathead (F1)

Florinda (F1)

Frankie (F1)

FreddyB (F1)

Fruitloop (F1)

Galactic (F1)

Gandalph (F1)

Geralt (F1)

GigiOuiOui (F1)

Girafales (F1)

Girr (F1)

Gorge (F1)

GUmbie (F1)

Guppsters (F1)

Hades (F1)

Hamulus (F1)

Harley (F1)

Hegedechwinu (F1)

Hlubikazi (F1)

Ibhubesi (F1)

IbOuu (F1)

IMpilo (F1)

Inventum (F1)

IrishSherpFalk (F1)

JalFarm20 (F1)

James (F1)

Jarcob (F1)

Jinglebell (F1)

Job42 (F1)

JoeyJr (F1)

Juice456 (F1)

Juniper1 (F1)

Karhdo (F1)

Kenuha5 (F1)

Kersh (F1)

Kimberlium (F1)

KingMidas (F1)

Kingsley (F1)

Koella (F1)

Krakatau (F1)

KristaRAM (F1)

LastJedi (F1)

Latretium (F1)

Leozinho (F1)

Leperchaun (F1)

LilMoolah (F1)

LittleShirley (F1)

Lizziana (F1)

Llama (F1)

Llij (F1)

Lorde (F1)

LunaBlu (F1)

Madiba (F1)

MadMen (F1)

Mahavrat (F1)

Mandlovu (F1)

Mantra (F1)

Maravista (F1)

Marker (F1)

Martik (F1)

Mattes (F1)

Melissauren88 (F1)

MilanaBonita (F1)

MilleniumForce (F1)

MinionDave (F1)

Minnie (F1)

Misha28 (F1)

MisterCuddles (F1)

Modragons (F1)

Moonbeam (F1)

Mova (F1)

Mozy (F1)

Ms6 (F1)

MulchExplorer (F1)

Mutaforma13 (F1)

Nimbo (F1)

Nitzel (F1)

Nivrat (F1)

NormanBulbieJr (F1)

Ochi17 (F1)

OfUltron (F1)

Ogopogo (F1)

Oksu (F1)

OldBen (F1)

OlympiaSaint (F1)

Ovechkin (F1)

OwlsT2W (F1)

Pacc40 (F1)

Phalconet (F1)

Phanphagia (F1)

PHappiness (F1)

Phasih (F1)

Phatniss (F1)

PhesterPhotato (F1)

Philus (F1)

Piper2020 (F1)

Pippy (F1)

Plumbus (F1)

PMC (F1)

Poenanya (F1)

Polka14 (F1)

Pollywog (F1)

PopTart (F1)

Priscilla (F1)

QuickMath (F1)

Quico (F1)

Radiance (F1)

Ramsey (F1)

RedBird (F1)

Rialto (F1)

Rita (F1)

RitaG (F1)

Rockne (F1)

RockyHorror (F1)

Royals2015 (F1)

Ruby (F1)

Saal (F1)

Sabbb (F1)

Sandalphon (F1)

Sarma624 (F1)

Sassafras (F1)

SassyB (F1)

Scottish (F1)

Seabastian (F1)

Seagreen (F1)

SG4 (F1)

Shauna1 (F1)

ShiLan (F1)

ShowerHandel (F1)

ShroomBoi (F1)

SimranZ1 (F1)

SiSi (F1)

Sparkdehlily (F1)

Spartacus (F1)

Spikelee (F1)

Spoonbill (F1)

StAnnes (F1)

Stap (F1)

Starcevich (F1)

Strokeseat (F1)

SuperGrey (F1)

SwagPigglett (F1)

Taj (F1)

TDanisky (F1)

TootsiePop (F1)

Tootsieroll (F1)

Totinger (F1)

Tweety (F1)

UncleRicky (F1)

Velveteen (F1)

Veteran (F1)

VRedHorse (F1)

Wachhund (F1)

Wee (F1)

Whatsapiecost (F1)

Whouxphf (F1)

WillSterrel (F1)

XFactor (F1)

Yorick (F1)

Zerg (F1)

Zizzle (F1)

Avani (F2)

Che9d (F2)

Demsculpinboyz (F2)

Jabbawokkie (F2)

Soul22 (F2)

Yoshi (F2)

Zapner (F2)

Squirty (F3)

LunaStella (F4)

Renaud18 (F4)

TChen (F4)

ThetaBob (F4)

Cornie (F5)

Toron (F6)

Annotating InstitutionUnknown or unassigned
Annotation StatusIn GenBank
MorphotypeSiphoviridae
Number of Genes102
Number of tRNAs0
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

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Daenerys_1

Daenerys_2
(terminase large subunit)

Daenerys_3
(portal protein)

Daenerys_4
(capsid maturation protease)

Daenerys_5
(scaffolding protein)

Daenerys_6
(major capsid protein)

Daenerys_7
(head-to-tail adaptor)

Daenerys_8
(head-to-tail stopper)

Daenerys_9

Daenerys_10
(tail terminator)

Daenerys_11
(major tail subunit)

Daenerys_12
(tail assembly chaperone)

Daenerys_13
(tail assembly chaperone)

Daenerys_14
(tape measure protein)

Daenerys_15
(minor tail protein)

Daenerys_16
(minor tail protein)

Daenerys_17
(minor tail protein)

Daenerys_18
(minor tail protein)

Daenerys_19
(D-Ala-D-Ala carboxypeptidase)

Daenerys_20

Daenerys_21

Daenerys_22

Daenerys_23

Daenerys_24

Daenerys_25

Daenerys_26

Daenerys_27

Daenerys_28

Daenerys_29

Daenerys_30
(lysin A)

Daenerys_31
(lysin B)

Daenerys_32
(holin)

Daenerys_33

Daenerys_34

Daenerys_35
(DnaQ-like DNA polymerase III subunit)

Daenerys_36

Daenerys_37

Daenerys_38

Daenerys_39
(Xis)

Daenerys_40
(tyrosine integrase)

Daenerys_41

Daenerys_42
(immunity repressor)

Daenerys_43
(Cro protein)

Daenerys_44

Daenerys_45

Daenerys_46

Daenerys_47

Daenerys_48

Daenerys_49

Daenerys_50

Daenerys_51
(WhiB)

Daenerys_52

Daenerys_53
(WhiB)

Daenerys_54
(HTH DNA binding protein)

Daenerys_55

Daenerys_56

Daenerys_57

Daenerys_58
(RecA-like DNA recombinase)

Daenerys_59

Daenerys_60
(HNH endonuclease)

Daenerys_61
(DNA methylase)

Daenerys_62

Daenerys_63
(DNA methylase)

Daenerys_64

Daenerys_65

Daenerys_66

Daenerys_67

Daenerys_68
(DnaQ-like DNA polymerase III subunit)

Daenerys_69

Daenerys_70
(methylase)

Daenerys_71

Daenerys_72

Daenerys_73
(DNA methylase)

Daenerys_74

Daenerys_75

Daenerys_76

Daenerys_77

Daenerys_78

Daenerys_79

Daenerys_80

Daenerys_81

Daenerys_82

Daenerys_83

Daenerys_84

Daenerys_85

Daenerys_86

Daenerys_87

Daenerys_88

Daenerys_89

Daenerys_90

Daenerys_91

Daenerys_92
(putative transcriptional regulator)

Daenerys_93

Daenerys_94

Daenerys_95

Daenerys_96

Daenerys_97

Daenerys_98

Daenerys_99
(galactosyltransferase)

Daenerys_100

Daenerys_101
(glycosyltransferase)

Daenerys_102
(HNH endonuclease)

Publication Info
Uploaded to GenBank?Yes
GenBank AccessionKF017005
Refseq NumberNC_022068
Published in PaperPope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity
Archiving Info
Archiving status Archived
Pitt Freezer Box# 1
Pitt Freezer Box Grid# E11