Mycobacterium phage Jabbawokkie
Know something about this phage that we don't? Modify its data.
Detailed Information for Phage Jabbawokkie
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByTyler Walburn
Year Found2012
Location FoundPittsburgh, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation TemperatureNot entered
GPS Coordinates40.440644 N, 79.958839 W Map
Discovery NotesFrom soil under a bush. It was at 8:30 p.m. Cloudy. Humid. 73 degree fahrenheit
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 15, 2013
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIon Torrent Sequencing
Approximate Shotgun Coverage570
Sanger Finishing Reactions7
Genome length (bp)55213
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCTCAGGGCAT
GC Content61.1%
Fasta file available?Yes: Download fasta file
Characterization
ClusterF
SubclusterF2
Cluster Life CycleTemperate
Other Cluster Members

Click to View

Blarby (None)

MulchSalad (None)

Akhila (F1)

Alexphander (F1)

AlpineSix (F1)

ArcusAngelus (F1)

Ardmore (F1)

Aubs (F1)

Awesomesauce (F1)

Batiatus (F1)

Beakin (F1)

BigPhil (F1)

Bipolar (F1)

Blexus (F1)

BlueCrab (F1)

BobaPhett (F1)

Bobi (F1)

BodEinwohner17 (F1)

Boomer (F1)

Brocalys (F1)

Bubbles123 (F1)

Burwell21 (F1)

BuzzLyseyear (F1)

ByChance (F1)

Byougenkin (F1)

Cabrinians (F1)

CaptainTrips (F1)

Cerasum (F1)

Che8 (F1)

Chevrolet (F1)

ChickenDinner (F1)

Chuckly (F1)

Clifton (F1)

Coco12 (F1)

Cornucopia (F1)

Crumble (F1)

DaddyRickover (F1)

Daenerys (F1)

Dante (F1)

DaWorst (F1)

DeadP (F1)

Deb65 (F1)

DillTech15 (F1)

DirtMcgirt (F1)

DLane (F1)

DocMcStuffins (F1)

Donkeykong (F1)

Doomphist (F1)

Dorothy (F1)

DosHalletts (F1)

DotProduct (F1)

Doug (F1)

Drago (F1)

DRBy19 (F1)

Eish (F1)

EleanorGeorge (F1)

Emma (F1)

Empress (F1)

Enby (F1)

Eradicator (F1)

Estave1 (F1)

Fancypants (F1)

Fastidio (F1)

Filuzino (F1)

Firehouse51 (F1)

Flathead (F1)

Florinda (F1)

Frankie (F1)

FreddyB (F1)

Fruitloop (F1)

Galactic (F1)

Gandalph (F1)

Geralt (F1)

GigiOuiOui (F1)

Girafales (F1)

Girr (F1)

Gorge (F1)

GUmbie (F1)

Guppsters (F1)

Hades (F1)

Hamulus (F1)

Harley (F1)

Hegedechwinu (F1)

Hlubikazi (F1)

Ibhubesi (F1)

IbOuu (F1)

IMpilo (F1)

Inventum (F1)

IrishSherpFalk (F1)

JalFarm20 (F1)

James (F1)

Jarcob (F1)

Jinglebell (F1)

Job42 (F1)

JoeyJr (F1)

Juice456 (F1)

Juniper1 (F1)

Karhdo (F1)

Kenuha5 (F1)

Kersh (F1)

Kimberlium (F1)

KingMidas (F1)

Kingsley (F1)

Koella (F1)

Krakatau (F1)

KristaRAM (F1)

LastJedi (F1)

Latretium (F1)

Leozinho (F1)

Leperchaun (F1)

LilMoolah (F1)

LittleShirley (F1)

Lizziana (F1)

Llama (F1)

Llij (F1)

Lorde (F1)

LunaBlu (F1)

Madiba (F1)

MadMen (F1)

Mahavrat (F1)

Mandlovu (F1)

Mantra (F1)

Maravista (F1)

Marker (F1)

Martik (F1)

Mattes (F1)

Melissauren88 (F1)

MilanaBonita (F1)

MilleniumForce (F1)

MinionDave (F1)

Minnie (F1)

Misha28 (F1)

MisterCuddles (F1)

Modragons (F1)

Moonbeam (F1)

Mova (F1)

Mozy (F1)

Ms6 (F1)

MulchExplorer (F1)

Mutaforma13 (F1)

Nimbo (F1)

Nitzel (F1)

Nivrat (F1)

NormanBulbieJr (F1)

Ochi17 (F1)

OfUltron (F1)

Ogopogo (F1)

Oksu (F1)

OldBen (F1)

OlympiaSaint (F1)

Ovechkin (F1)

OwlsT2W (F1)

Pacc40 (F1)

Phalconet (F1)

Phanphagia (F1)

PHappiness (F1)

Phasih (F1)

Phatniss (F1)

PhesterPhotato (F1)

Philus (F1)

Piper2020 (F1)

Pippy (F1)

Plumbus (F1)

PMC (F1)

Poenanya (F1)

Polka14 (F1)

Pollywog (F1)

PopTart (F1)

Priscilla (F1)

QuickMath (F1)

Quico (F1)

Radiance (F1)

Ramsey (F1)

RedBird (F1)

Rialto (F1)

Rita (F1)

RitaG (F1)

Rockne (F1)

RockyHorror (F1)

Royals2015 (F1)

Ruby (F1)

Saal (F1)

Sabbb (F1)

Sandalphon (F1)

Sarma624 (F1)

Sassafras (F1)

SassyB (F1)

Scottish (F1)

Seabastian (F1)

Seagreen (F1)

SG4 (F1)

Shauna1 (F1)

ShiLan (F1)

ShowerHandel (F1)

ShroomBoi (F1)

SimranZ1 (F1)

SiSi (F1)

Sparkdehlily (F1)

Spartacus (F1)

Spikelee (F1)

Spoonbill (F1)

StAnnes (F1)

Stap (F1)

Starcevich (F1)

Strokeseat (F1)

SuperGrey (F1)

SwagPigglett (F1)

Taj (F1)

TDanisky (F1)

TootsiePop (F1)

Tootsieroll (F1)

Totinger (F1)

Tweety (F1)

UncleRicky (F1)

Velveteen (F1)

Veteran (F1)

VRedHorse (F1)

Wachhund (F1)

Wee (F1)

Whatsapiecost (F1)

Whouxphf (F1)

WillSterrel (F1)

XFactor (F1)

Yorick (F1)

Zerg (F1)

Zizzle (F1)

Avani (F2)

Che9d (F2)

Demsculpinboyz (F2)

Jabbawokkie (F2)

Soul22 (F2)

Yoshi (F2)

Zapner (F2)

Squirty (F3)

LunaStella (F4)

Renaud18 (F4)

TChen (F4)

ThetaBob (F4)

Cornie (F5)

Toron (F6)

Annotating InstitutionUnknown or unassigned
Annotation StatusIn GenBank
Plaque NotesVery small plaques
MorphotypeSiphoviridae
Number of Genes106
Number of tRNAs0
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

Click to View

Jabbawokkie_1
(HNH endonuclease)

Jabbawokkie_2
(HNH endonuclease)

Jabbawokkie_3

Jabbawokkie_4
(terminase)

Jabbawokkie_5
(portal protein)

Jabbawokkie_6
(MuF-like minor capsid protein)

Jabbawokkie_7
(scaffolding protein)

Jabbawokkie_8
(major capsid protein)

Jabbawokkie_9

Jabbawokkie_10
(head-to-tail adaptor)

Jabbawokkie_11

Jabbawokkie_12

Jabbawokkie_13

Jabbawokkie_14

Jabbawokkie_15
(major tail protein)

Jabbawokkie_16
(tail assembly chaperone)

Jabbawokkie_17
(tail assembly chaperone)

Jabbawokkie_19
(tape measure protein)

Jabbawokkie_20
(minor tail protein)

Jabbawokkie_21
(minor tail protein)

Jabbawokkie_22
(minor tail protein)

Jabbawokkie_23

Jabbawokkie_24
(minor tail protein)

Jabbawokkie_25
(minor tail protein)

Jabbawokkie_26
(minor tail protein)

Jabbawokkie_27
(minor tail protein)

Jabbawokkie_28
(minor tail protein)

Jabbawokkie_29

Jabbawokkie_30
(HNH endonuclease)

Jabbawokkie_31
(helix-turn-helix DNA binding protein)

Jabbawokkie_32

Jabbawokkie_33

Jabbawokkie_34

Jabbawokkie_35

Jabbawokkie_36

Jabbawokkie_37

Jabbawokkie_38
(lysin A)

Jabbawokkie_39
(lysin B)

Jabbawokkie_40

Jabbawokkie_41

Jabbawokkie_42

Jabbawokkie_43

Jabbawokkie_44

Jabbawokkie_45

Jabbawokkie_46

Jabbawokkie_47

Jabbawokkie_48

Jabbawokkie_49

Jabbawokkie_50

Jabbawokkie_51

Jabbawokkie_52

Jabbawokkie_53

Jabbawokkie_55

Jabbawokkie_56

Jabbawokkie_57
(tyrosine integrase)

Jabbawokkie_58

Jabbawokkie_59
(immunity repressor)

Jabbawokkie_60
(helix-turn-helix DNA binding protein)

Jabbawokkie_61

Jabbawokkie_62

Jabbawokkie_63
(excise)

Jabbawokkie_64

Jabbawokkie_65

Jabbawokkie_66

Jabbawokkie_67

Jabbawokkie_68

Jabbawokkie_69

Jabbawokkie_70

Jabbawokkie_71
(WhiB family transcription factor)

Jabbawokkie_72

Jabbawokkie_73
(WhiB family transcription factor)

Jabbawokkie_74

Jabbawokkie_75

Jabbawokkie_76

Jabbawokkie_77

Jabbawokkie_78
(AAA-ATPase)

Jabbawokkie_79

Jabbawokkie_80
(HNH endonuclease)

Jabbawokkie_81

Jabbawokkie_82

Jabbawokkie_83
(G-I-Y Y-I-G endonuclease)

Jabbawokkie_84

Jabbawokkie_85

Jabbawokkie_86

Jabbawokkie_87

Jabbawokkie_88

Jabbawokkie_89

Jabbawokkie_90

Jabbawokkie_91

Jabbawokkie_92

Jabbawokkie_93

Jabbawokkie_94

Jabbawokkie_95

Jabbawokkie_96

Jabbawokkie_97

Jabbawokkie_98

Jabbawokkie_99

Jabbawokkie_100

Jabbawokkie_101

Jabbawokkie_102

Jabbawokkie_103

Jabbawokkie_104

Jabbawokkie_105

Jabbawokkie_106
(glycosyltransferase)

Jabbawokkie_107
(glycosyltransferase)

Jabbawokkie_108
(glycosyltransferase)

Publication Info
Uploaded to GenBank?Yes
GenBank AccessionKF017003
Refseq NumberNC_022069
Published in PaperPope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity
Archiving Info
Archiving status Archived
Pitt Freezer Box# 2
Pitt Freezer Box Grid# A10
Available Files
Plaque PictureDownload
EM PictureDownload