Mycobacterium phage Job42
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Detailed Information for Phage Job42
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByJames O'Brien
Year Found2011
Location FoundProvidence, RI USA
Finding InstitutionProvidence College
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates41.843333 N, 71.437777 W Map
Discovery NotesMoist, fertile soil. Found on a rainy day at 65° F.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 17, 2012
Approximate Shotgun Coverage210
Genome length (bp)59626
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCCGACGGCAT
GC Content61.2%
Fasta file available?Yes: Download fasta file
Characterization
ClusterF
SubclusterF1
Cluster Life CycleTemperate
Other Cluster Members

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Blarby (None)

MulchSalad (None)

Akhila (F1)

Alexphander (F1)

AlpineSix (F1)

ArcusAngelus (F1)

Ardmore (F1)

Aubs (F1)

Awesomesauce (F1)

Batiatus (F1)

Beakin (F1)

BigPhil (F1)

Bipolar (F1)

Blexus (F1)

BlueCrab (F1)

BobaPhett (F1)

Bobi (F1)

BodEinwohner17 (F1)

Boomer (F1)

Brocalys (F1)

Bubbles123 (F1)

Burwell21 (F1)

BuzzLyseyear (F1)

ByChance (F1)

Byougenkin (F1)

Cabrinians (F1)

CaptainTrips (F1)

Cerasum (F1)

Che8 (F1)

Chevrolet (F1)

ChickenDinner (F1)

Chuckly (F1)

Clifton (F1)

Coco12 (F1)

Cornucopia (F1)

Crumble (F1)

DaddyRickover (F1)

Daenerys (F1)

Dante (F1)

DaWorst (F1)

DeadP (F1)

Deb65 (F1)

DillTech15 (F1)

DirtMcgirt (F1)

DLane (F1)

DocMcStuffins (F1)

Donkeykong (F1)

Doomphist (F1)

Dorothy (F1)

DosHalletts (F1)

DotProduct (F1)

Doug (F1)

Drago (F1)

DRBy19 (F1)

Eish (F1)

EleanorGeorge (F1)

Emma (F1)

Empress (F1)

Enby (F1)

Eradicator (F1)

Estave1 (F1)

Fancypants (F1)

Fastidio (F1)

Filuzino (F1)

Firehouse51 (F1)

Flathead (F1)

Florinda (F1)

Frankie (F1)

FreddyB (F1)

Fruitloop (F1)

Galactic (F1)

Gandalph (F1)

Geralt (F1)

GigiOuiOui (F1)

Girafales (F1)

Girr (F1)

Gorge (F1)

GUmbie (F1)

Guppsters (F1)

Hades (F1)

Hamulus (F1)

Harley (F1)

Hegedechwinu (F1)

Hlubikazi (F1)

Ibhubesi (F1)

IbOuu (F1)

IMpilo (F1)

Inventum (F1)

IrishSherpFalk (F1)

JalFarm20 (F1)

James (F1)

Jarcob (F1)

Jinglebell (F1)

Job42 (F1)

JoeyJr (F1)

Juice456 (F1)

Juniper1 (F1)

Karhdo (F1)

Kenuha5 (F1)

Kersh (F1)

Kimberlium (F1)

KingMidas (F1)

Kingsley (F1)

Koella (F1)

Krakatau (F1)

KristaRAM (F1)

LastJedi (F1)

Latretium (F1)

Leozinho (F1)

Leperchaun (F1)

LilMoolah (F1)

LittleShirley (F1)

Lizziana (F1)

Llama (F1)

Llij (F1)

Lorde (F1)

LunaBlu (F1)

Madiba (F1)

MadMen (F1)

Mahavrat (F1)

Mandlovu (F1)

Mantra (F1)

Maravista (F1)

Marker (F1)

Martik (F1)

Mattes (F1)

Melissauren88 (F1)

MilanaBonita (F1)

MilleniumForce (F1)

MinionDave (F1)

Minnie (F1)

Misha28 (F1)

MisterCuddles (F1)

Modragons (F1)

Moonbeam (F1)

Mova (F1)

Mozy (F1)

Ms6 (F1)

MulchExplorer (F1)

Mutaforma13 (F1)

Nimbo (F1)

Nitzel (F1)

Nivrat (F1)

NormanBulbieJr (F1)

Ochi17 (F1)

OfUltron (F1)

Ogopogo (F1)

Oksu (F1)

OldBen (F1)

OlympiaSaint (F1)

Ovechkin (F1)

OwlsT2W (F1)

Pacc40 (F1)

Phalconet (F1)

Phanphagia (F1)

PHappiness (F1)

Phasih (F1)

Phatniss (F1)

PhesterPhotato (F1)

Philus (F1)

Piper2020 (F1)

Pippy (F1)

Plumbus (F1)

PMC (F1)

Poenanya (F1)

Polka14 (F1)

Pollywog (F1)

PopTart (F1)

Priscilla (F1)

QuickMath (F1)

Quico (F1)

Radiance (F1)

Ramsey (F1)

RedBird (F1)

Rialto (F1)

Rita (F1)

RitaG (F1)

Rockne (F1)

RockyHorror (F1)

Royals2015 (F1)

Ruby (F1)

Saal (F1)

Sabbb (F1)

Sandalphon (F1)

Sarma624 (F1)

Sassafras (F1)

SassyB (F1)

Scottish (F1)

Seabastian (F1)

Seagreen (F1)

SG4 (F1)

Shauna1 (F1)

ShiLan (F1)

ShowerHandel (F1)

ShroomBoi (F1)

SimranZ1 (F1)

SiSi (F1)

Sparkdehlily (F1)

Spartacus (F1)

Spikelee (F1)

Spoonbill (F1)

StAnnes (F1)

Stap (F1)

Starcevich (F1)

Strokeseat (F1)

SuperGrey (F1)

SwagPigglett (F1)

Taj (F1)

TDanisky (F1)

TootsiePop (F1)

Tootsieroll (F1)

Totinger (F1)

Tweety (F1)

UncleRicky (F1)

Velveteen (F1)

Veteran (F1)

VRedHorse (F1)

Wachhund (F1)

Wee (F1)

Whatsapiecost (F1)

Whouxphf (F1)

WillSterrel (F1)

XFactor (F1)

Yorick (F1)

Zerg (F1)

Zizzle (F1)

Avani (F2)

Che9d (F2)

Demsculpinboyz (F2)

Jabbawokkie (F2)

Soul22 (F2)

Yoshi (F2)

Zapner (F2)

Squirty (F3)

LunaStella (F4)

Renaud18 (F4)

TChen (F4)

ThetaBob (F4)

Cornie (F5)

Toron (F6)

Annotating InstitutionUnknown or unassigned
Annotation StatusIn GenBank
Plaque NotesComet plaque. Small clear plaque surrounded by a larger opaque plaque.
MorphotypeSiphoviridae
Number of Genes106
Number of tRNAs0
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

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Job42_1
(HNH endonuclease)

Job42_2

Job42_3
(terminase)

Job42_4
(portal protein)

Job42_5
(capsid maturation protease)

Job42_6
(scaffolding protein)

Job42_7
(major capsid protein)

Job42_8
(head-to-tail adaptor)

Job42_9
(head-to-tail stopper)

Job42_10

Job42_11
(tail terminator)

Job42_12
(major tail subunit)

Job42_13
(tail assembly chaperone)

Job42_14
(tail assembly chaperone)

Job42_15
(HNH endonuclease)

Job42_16
(tape measure protein)

Job42_17
(transposase)

Job42_18
(minor tail protein)

Job42_19
(minor tail protein)

Job42_20
(minor tail protein)

Job42_21
(minor tail protein)

Job42_22
(D-Ala-D-Ala carboxypeptidase)

Job42_23
(minor tail protein)

Job42_24

Job42_25

Job42_26

Job42_27

Job42_28

Job42_29

Job42_30

Job42_31

Job42_32

Job42_33

Job42_34
(lysin A)

Job42_35
(lysin B)

Job42_36
(holin)

Job42_37

Job42_38

Job42_39
(DnaQ-like DNA polymerase III subunit)

Job42_40

Job42_41

Job42_42

Job42_43
(DNA binding domain protein)

Job42_44
(tyrosine integrase)

Job42_45

Job42_46
(immunity repressor)

Job42_47
(HTH DNA binding domain protein)

Job42_48
(antirepressor)

Job42_49

Job42_50

Job42_51

Job42_52

Job42_53

Job42_54

Job42_55

Job42_56

Job42_57

Job42_58

Job42_59
(WhiB)

Job42_60

Job42_61
(WhiB)

Job42_62
(HTH DNA binding protein)

Job42_63

Job42_64

Job42_65

Job42_66

Job42_67
(RecA-like DNA recombinase)

Job42_68
(HNH endonuclease domain protein)

Job42_69
(DNA methylase)

Job42_70

Job42_71

Job42_72

Job42_73

Job42_74

Job42_75

Job42_76

Job42_77

Job42_78

Job42_79

Job42_80

Job42_81

Job42_82

Job42_83

Job42_84

Job42_85

Job42_86

Job42_87

Job42_88

Job42_89

Job42_90

Job42_91

Job42_92

Job42_93
(GIY-YIG endonuclease)

Job42_94

Job42_95

Job42_96

Job42_97

Job42_98

Job42_99

Job42_100

Job42_101

Job42_102

Job42_103
(glycosyltransferase)

Job42_104

Job42_105

Job42_106
(glycosyltransferase)

Publication Info
Uploaded to GenBank?Yes
GenBank AccessionKC661280
Refseq NumberNC_021538
Published in PaperPope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity
Archiving Info
Archiving status Archived
SEA Designator 2011PROVjob42JOB
Pitt Freezer Box# 26
Pitt Freezer Box Grid# 13