| Detailed Information for Phage Shauna1 |
| Discovery Information |
| Isolation Host | Mycobacterium smegmatis mc²155 |
| Found By | Marshall Sheide |
| Year Found | 2010 |
| Location Found | Orem, UT USA |
| Finding Institution | Brigham Young University |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | Not entered |
| GPS Coordinates | 40.325986 N, 111.735480 W Map |
| Discovery Notes | It was right next to a strawberry patch on some moist ground. Temperature was about 70 degrees Fahrenheit, and it was found in some rich soil in a green house. |
| Sequencing Information |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Mar 1, 2011 |
| Genome length (bp) | 59315 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 10 bases |
| Overhang Sequence | CGGTAGGCGC |
| GC Content | 61.7% |
| Fasta file available? | Yes: Download fasta file |
| Characterization |
| Cluster | F |
| Subcluster | F1 |
| Cluster Life Cycle | Temperate |
| Other Cluster Members |
|
| Annotating Institution | Unknown or unassigned |
| Annotation Status | In GenBank |
| Plaque Notes | Plaques are very clear and show up very quickly. the phage has a lytic cycle and will create a web plate withing 24 go 30 hours. there isn't any variation except that the plaques became more and more clear as I purified it. After dilution 3, the morphology has stayed the same each time. |
| Morphotype | Siphoviridae |
| Number of Genes | 107 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
|
| Submitted Minimal DNA Master File | Download |
| Publication Info |
| Uploaded to GenBank? | Yes |
| GenBank Accession | JN020141 |
| Refseq Number | None yet |
| Published in Paper | Pope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity |
| Archiving Info |
| Archiving status |
Archived |
| SEA Designator |
2010BRYOshauna1MGS |
| Pitt Freezer Box# |
11 |
| Pitt Freezer Box Grid# |
53 |
| Available Files |
| Plaque Picture | Download |
| EM Picture | Download |
| XML File | Download |
| GenBank File for Phamerator | Download |
