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Mycobacterium phage AlishaPH

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Detailed Information for Phage AlishaPH
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByEmma Livernois and Robin Austin
Year Found2015
Location FoundNorthampton, MA USA
Finding InstitutionSmith College
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS CoordinatesUnavailable
Discovery NotesIsolated from moist soil, 1-3 cm deep underneath deciduous trees near a field, in september.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedMar 4, 2016
Sequencing FacilitySmith College
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage662
Genome length (bp)57034
Character of genome ends3' Sticky Overhang
Overhang Length11 bases
Overhang SequenceCTCGTAGGCAT
GC Content66.6%
Fasta file available?Available upon entering GPS coordinates
Characterization
ClusterK
SubclusterK1
Cluster Life CycleTemperate
Other Cluster Members

Click to View

ActinUp (K1)

Adephagia (K1)

Adonis (K1)

AlishaPH (K1)

Amelie (K1)

Anaya (K1)

Angelica (K1)

Apocalypse (K1)

Atiba (K1)

BarrelRoll (K1)

BEEST (K1)

Beezoo (K1)

Bella96 (K1)

Belladonna (K1)

BGlluviae (K1)

Biglebops (K1)

Capricorn (K1)

Chris (K1)

CREW (K1)

CrimD (K1)

Curiosium (K1)

Dalmuri (K1)

Deby (K1)

DrHayes (K1)

Efra2 (K1)

Emerson (K1)

Enkosi (K1)

Ganymede (K1)

Geraldini (K1)

Guanica15 (K1)

HedwigODU (K1)

Homura (K1)

Hyperbowlee (K1)

Inky (K1)

JAWS (K1)

Jeckyll (K1)

Joy99 (K1)

KiSi (K1)

LastHope (K1)

LaterM (K1)

LeMond (K1)

LilPharaoh (K1)

LindNT (K1)

MarkPhew (K1)

Mdavu (K1)

Murucutumbu (K1)

Mynx (K1)

Nibb (K1)

Niklas (K1)

Nutello (K1)

Oscar (K1)

Padfoot (K1)

Peanam (K1)

Peel (K1)

Piatt (K1)

Prithvi (K1)

QuincyRose (K1)

Ramen (K1)

Rapunzel97 (K1)

SamuelLPlaqson (K1)

Scarlett (K1)

SgtBeansprout (K1)

Shaobing (K1)

Slimphazie (K1)

Spock (K1)

Sulley (K1)

Tachez (K1)

TreyKay (K1)

Twitch (K1)

Urkel (K1)

Validus (K1)

Veliki (K1)

YoureAdopted (K1)

Yunkel11 (K1)

Zavala (K1)

BoostSeason (K2)

DismalFunk (K2)

DismalStressor (K2)

Findley (K2)

Marcoliusprime (K2)

Milly (K2)

Mufasa (K2)

TM4 (K2)

ZoeJ (K2)

Hurricane (K3)

Keshu (K3)

MacnCheese (K3)

Pixie (K3)

ShedlockHolmes (K3)

TBond007 (K3)

Boilgate (K4)

Chancellor (K4)

Cheetobro (K4)

Eponine (K4)

Fionnbharth (K4)

JF1 (K4)

Juliette (K4)

Malthus (K4)

MissDaisy (K4)

Mitti (K4)

Patt (K4)

Reptar3000 (K4)

Ruthiejr (K4)

SamScheppers (K4)

Slarp (K4)

Taquito (K4)

Wintermute (K4)

AlleyCat (K5)

Collard (K5)

Edugator (K5)

Gengar (K5)

Guillsminger (K5)

Kratio (K5)

Larva (K5)

Leston (K5)

OkiRoe (K5)

Omnicron (K5)

Paola (K5)

Rando14 (K5)

Thyatira (K5)

Waterfoul (K5)

Amgine (K6)

Amohnition (K6)

Bryler (K6)

Cain (K6)

DarthP (K6)

Ekdilam (K6)

Hammy (K6)

Krueger (K6)

Marshawn (K6)

PhelpsODU (K6)

Phrank (K6)

SirPhilip (K6)

Unicorn (K6)

Ximenita (K6)

Yuna (K6)

Aminay (K7)

Annotating InstitutionSmith College
Annotation StatusIn GenBank
Plaque NotesVery clear plaques
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

Click to View

AlishaPH_1

AlishaPH_2

AlishaPH_3

AlishaPH_4

AlishaPH_6

AlishaPH_7

AlishaPH_8
(terminase)

AlishaPH_9
(portal protein)

AlishaPH_10
(capsid maturation protease)

AlishaPH_11

AlishaPH_12
(scaffolding protein)

AlishaPH_13
(major capsid protein)

AlishaPH_14
(head-to-tail adaptor)

AlishaPH_15
(head-to-tail stopper)

AlishaPH_16

AlishaPH_17
(tail terminator)

AlishaPH_18
(major tail protein)

AlishaPH_19
(tail assembly chaperone)

AlishaPH_20
(tail assembly chaperone)

AlishaPH_21
(tape measure protein)

AlishaPH_22
(minor tail protein)

AlishaPH_23
(minor tail protein)

AlishaPH_24

AlishaPH_25
(minor tail protein)

AlishaPH_26

AlishaPH_27
(minor tail protein)

AlishaPH_28
(minor tail protein)

AlishaPH_29

AlishaPH_30
(lysin A)

AlishaPH_31
(lysin B)

AlishaPH_32
(holin)

AlishaPH_33

AlishaPH_34

AlishaPH_35

AlishaPH_36

AlishaPH_37

AlishaPH_38

AlishaPH_39

AlishaPH_40

AlishaPH_41
(integrase)

AlishaPH_42

AlishaPH_43
(immunity repressor)

AlishaPH_44

AlishaPH_45

AlishaPH_46

AlishaPH_47

AlishaPH_48

AlishaPH_49

AlishaPH_50
(WhiB family transcription factor)

AlishaPH_51

AlishaPH_52

AlishaPH_53

AlishaPH_54

AlishaPH_55

AlishaPH_56

AlishaPH_57
(DnaQ-like exonuclease)

AlishaPH_58

AlishaPH_59

AlishaPH_60

AlishaPH_61

AlishaPH_62

AlishaPH_63

AlishaPH_64

AlishaPH_65

AlishaPH_66

AlishaPH_67

AlishaPH_68

AlishaPH_69
(DNA primase)

AlishaPH_70
(RusA-like resolvase)

AlishaPH_71

AlishaPH_72

AlishaPH_73

AlishaPH_74

AlishaPH_75
(protease)

AlishaPH_76

AlishaPH_77

AlishaPH_78

AlishaPH_79

AlishaPH_80

AlishaPH_81

AlishaPH_82

AlishaPH_83

AlishaPH_84

AlishaPH_85

AlishaPH_86

AlishaPH_87

AlishaPH_88

AlishaPH_89
(HNH endonuclease)

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMH077577
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 23
Pitt Freezer Box Grid# E12
Available Files
EM PictureDownload
GenBank File for PhameratorDownload