Mycobacterium phage Padfoot
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Detailed Information for Phage Padfoot
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByAleksandra Masiak
Year Found2013
Location FoundHolland, MI USA
Finding InstitutionHope College
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature30°C
GPS Coordinates42.788333 N, 86.100278 W Map
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedAug 8, 2019
Sequencing FacilityHope College
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1118
Genome length (bp)59905
Character of genome ends3' Sticky Overhang
Overhang Length11 bases
Overhang SequenceCTCGTAGGCAT
GC Content66.6%
Fasta file available?Yes: Download fasta file
Characterization
ClusterK
SubclusterK1
Cluster Life CycleTemperate
Other Cluster Members

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ActinUp (K1)

Adephagia (K1)

Adonis (K1)

AlishaPH (K1)

Amelie (K1)

Anaya (K1)

Angelica (K1)

Apocalypse (K1)

Asayake (K1)

Atiba (K1)

BaghaKamala (K1)

BarrelRoll (K1)

BEEST (K1)

Beezoo (K1)

Bella96 (K1)

Belladonna (K1)

BGlluviae (K1)

Biglebops (K1)

Blizzard (K1)

Boiiii (K1)

Capricorn (K1)

CaseJules (K1)

Chris (K1)

CREW (K1)

CrimD (K1)

Curiosium (K1)

Dalmuri (K1)

Deby (K1)

Devera (K1)

Dole (K1)

DrHayes (K1)

Durfee (K1)

Efra2 (K1)

Emerson (K1)

Enkosi (K1)

Ganymede (K1)

Geraldini (K1)

Guanica15 (K1)

HedwigODU (K1)

Homura (K1)

Hyperbowlee (K1)

Illumine (K1)

Inky (K1)

Jarvi (K1)

JAWS (K1)

Jeckyll (K1)

Joy99 (K1)

KiSi (K1)

LastHope (K1)

LaterM (K1)

LeMond (K1)

LilPharaoh (K1)

LindNT (K1)

MarkPhew (K1)

Mdavu (K1)

MeaningOfLife (K1)

Murucutumbu (K1)

Mynx (K1)

Nibb (K1)

Nikao (K1)

Niklas (K1)

Nutello (K1)

Oscar (K1)

Padfoot (K1)

Padpat (K1)

Peanam (K1)

Peel (K1)

Piatt (K1)

Pokerus (K1)

Prithvi (K1)

QuincyRose (K1)

Ramen (K1)

Rapunzel97 (K1)

SamuelLPlaqson (K1)

Scarlett (K1)

SgtBeansprout (K1)

Shaobing (K1)

ShiaSurprise (K1)

Slimphazie (K1)

Spock (K1)

Stinson (K1)

Sulley (K1)

Tachez (K1)

TreyKay (K1)

Twitch (K1)

Urkel (K1)

Validus (K1)

Veliki (K1)

YoureAdopted (K1)

Yunkel11 (K1)

Zavala (K1)

BoostSeason (K2)

DismalFunk (K2)

DismalStressor (K2)

Findley (K2)

Marcoliusprime (K2)

Milly (K2)

Mufasa (K2)

TM4 (K2)

ZoeJ (K2)

Hurricane (K3)

Keshu (K3)

MacnCheese (K3)

Pixie (K3)

ShedlockHolmes (K3)

TBond007 (K3)

Boilgate (K4)

Chancellor (K4)

Cheetobro (K4)

Eponine (K4)

Fionnbharth (K4)

JF1 (K4)

Juliette (K4)

Malthus (K4)

MissDaisy (K4)

Mitti (K4)

Patt (K4)

Reptar3000 (K4)

Ruthiejr (K4)

SamScheppers (K4)

Slarp (K4)

Taquito (K4)

Wintermute (K4)

AlleyCat (K5)

Collard (K5)

Edugator (K5)

Gengar (K5)

Guillsminger (K5)

InvictusManeo (K5)

Kratio (K5)

Larva (K5)

Leston (K5)

OkiRoe (K5)

Omnicron (K5)

Paola (K5)

Psycho (K5)

Rando14 (K5)

SoSeph (K5)

Thyatira (K5)

Waterfoul (K5)

Amgine (K6)

Amohnition (K6)

Bryler (K6)

Cain (K6)

DarthP (K6)

Ekdilam (K6)

Ellie (K6)

Fefferhead (K6)

Hammy (K6)

Krueger (K6)

Marshawn (K6)

PhelpsODU (K6)

Phrank (K6)

SirPhilip (K6)

Unicorn (K6)

Ximenita (K6)

Yuna (K6)

Aminay (K7)

Annotating InstitutionUniversity of North Georgia
Annotation StatusIn GenBank
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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Padfoot_1

Padfoot_2

Padfoot_3

Padfoot_4

Padfoot_6

Padfoot_7

Padfoot_8
(terminase)

Padfoot_9
(portal protein)

Padfoot_10
(MuF-like minor capsid protein)

Padfoot_11

Padfoot_12
(scaffolding protein)

Padfoot_13
(major capsid protein)

Padfoot_14
(head-to-tail adaptor)

Padfoot_15
(head-to-tail stopper)

Padfoot_16

Padfoot_17
(tail terminator)

Padfoot_18
(major tail protein)

Padfoot_19
(tail assembly chaperone)

Padfoot_20
(tail assembly chaperone)

Padfoot_21
(tape measure protein)

Padfoot_22
(minor tail protein)

Padfoot_23
(minor tail protein)

Padfoot_24
(minor tail protein)

Padfoot_25
(minor tail protein)

Padfoot_26

Padfoot_27
(minor tail protein)

Padfoot_28
(minor tail protein)

Padfoot_29

Padfoot_30
(lysin A)

Padfoot_31
(lysin B)

Padfoot_32
(holin)

Padfoot_33

Padfoot_34

Padfoot_35
(MRE11 double-strand break endo/exonuclease)

Padfoot_36
(helix-turn-helix DNA binding domain)

Padfoot_37

Padfoot_38

Padfoot_39

Padfoot_40

Padfoot_41
(tyrosine integrase)

Padfoot_42

Padfoot_43
(immunity repressor)

Padfoot_44
(helix-turn-helix DNA binding domain)

Padfoot_45
(excise)

Padfoot_46

Padfoot_47

Padfoot_48

Padfoot_49

Padfoot_50
(WhiB family transcription factor)

Padfoot_51

Padfoot_52

Padfoot_53

Padfoot_54

Padfoot_55

Padfoot_56

Padfoot_57
(DnaQ-like (DNA polymerase III subunit))

Padfoot_58

Padfoot_59

Padfoot_60

Padfoot_61
(exonuclease)

Padfoot_62

Padfoot_63

Padfoot_64

Padfoot_65

Padfoot_66
(NrdH-like glutaredoxin)

Padfoot_67

Padfoot_68
(HNH endonuclease)

Padfoot_69
(DNA primase/helicase)

Padfoot_70

Padfoot_71
(RusA-like resolvase (endonuclease))

Padfoot_72

Padfoot_73

Padfoot_74

Padfoot_75

Padfoot_76
(SprT-like protease)

Padfoot_77

Padfoot_78

Padfoot_79

Padfoot_80

Padfoot_81

Padfoot_82

Padfoot_83

Padfoot_84

Padfoot_85
(rtcB-like RNA ligase)

Padfoot_86
(DNA binding protein)

Padfoot_87

Padfoot_88

Padfoot_89

Padfoot_90

Padfoot_91
(antitoxin in toxin/antitoxin system, HicB-like)

Padfoot_92
(toxin in toxin/antitoxin system, HicA-like)

Padfoot_93

Padfoot_94

Padfoot_95

Padfoot_96
(HNH endonuclease)

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMW862990
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Lysate Titer 1.4x10^11
Pitt Freezer Box# 5
Pitt Freezer Box Grid# B6
Available Files
GenBank File for PhameratorDownload