Mycobacterium phage Shaobing
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Detailed Information for Phage Shaobing
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByHaoyun Yang
Year Found2016
Location FoundBlacksburg, VA US
Finding InstitutionVirginia Tech
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates37.2225 N, 80.4228 W Map
Naming NotesNamed after my favourite food.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 6, 2017
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1231
Genome length (bp)61030
Character of genome ends3' Sticky Overhang
Overhang Length11 bases
Overhang SequenceCTCGTAGGCAT
GC Content68.5%
Fasta file available?Yes: Download fasta file
Characterization
ClusterK
SubclusterK1
Cluster Life CycleTemperate
Other Cluster Members

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Aella (None)

AllaKazam (None)

Aloysius (None)

Andy (None)

Asayake (None)

Aspen (None)

Auroraborealis (None)

BackInNotBlack (None)

BaenaC (None)

Bailcon (None)

BasselJr (None)

Boogaloo (None)

Boyz (None)

Calcy (None)

Caroline (None)

Caspian (None)

Chat (None)

Cirrostratus (None)

Clarence (None)

Cookland (None)

Cortana (None)

Cunlay (None)

Dcuz (None)

Denara (None)

Dor110 (None)

DoubleSloth (None)

Dougal (None)

DrThomas (None)

DubyaDubya (None)

ElegantBeing (None)

Erinyes (None)

Fisch (None)

FitzSpotz (None)

GoBuffs (None)

GUsh (None)

GUsthebus (None)

Isa16 (None)

Jallie (None)

Jamanda (None)

Jameskc (None)

Kennel (None)

KevinPhangos (None)

LaFlor (None)

LanaDelPhay (None)

Lancelot (None)

LilPhil (None)

LuckyWorm (None)

MacArthur (None)

Machine (None)

ManBun (None)

Marilu (None)

Marvolo (None)

McSparkle (None)

Meow (None)

Mileyphyrus (None)

Misa (None)

Mochi (None)

Nestitis (None)

Noonan (None)

Pablo (None)

PeachyKay (None)

Pegasicorn (None)

Phaedra (None)

Phaguccine (None)

Phlynn (None)

Pita107 (None)

Plaqccine (None)

Pluto15 (None)

Poochlock (None)

PresidentPhayn (None)

PresThayne (None)

PuddlePaige (None)

Reina (None)

Rivierearbre (None)

Sabotage (None)

Smore (None)

Speckles360 (None)

SpeedyClaxton (None)

Spots16 (None)

Stoya (None)

SuJos8 (None)

SwaggyP (None)

Syra333 (None)

Thayne (None)

Tomothy (None)

TrippyB (None)

TRossi (None)

Uilani (None)

Winton (None)

Wivia (None)

Yachna (None)

Yianni (None)

Zag19 (None)

Zagup (None)

Zhage (None)

ActinUp (K1)

Adephagia (K1)

Adonis (K1)

AlishaPH (K1)

Amelie (K1)

Anaya (K1)

Angelica (K1)

Apocalypse (K1)

Atiba (K1)

BarrelRoll (K1)

Bash (K1)

BEEST (K1)

Beezoo (K1)

Bella96 (K1)

Belladonna (K1)

Biglebops (K1)

Blessed (K1)

BlueSky (K1)

Capricorn (K1)

Chris (K1)

Christoria (K1)

CREW (K1)

CrimD (K1)

Curiosium (K1)

Dalmuri (K1)

Deby (K1)

DrHayes (K1)

Efra2 (K1)

Emerson (K1)

Enkosi (K1)

Erdnod (K1)

Flash (K1)

Gansey (K1)

Geraldini (K1)

Guanica15 (K1)

Guimauve (K1)

HedwigODU (K1)

Homura (K1)

Inky (K1)

JAWS (K1)

Jeckyll (K1)

Jerome (K1)

Jersey (K1)

Jophie (K1)

Joy99 (K1)

KiSi (K1)

LastHope (K1)

LaterM (K1)

Lefty (K1)

Lela18 (K1)

LeMond (K1)

LeslieK (K1)

LilPharaoh (K1)

LindNT (K1)

MarkPhew (K1)

Mendoza (K1)

MicroMini (K1)

MLouK (K1)

Mozingo (K1)

Murucutumbu (K1)

Mynx (K1)

Nibb (K1)

Niklas (K1)

NimNO (K1)

Oscar (K1)

Peanam (K1)

PhindingNemo (K1)

Phineas3776 (K1)

Pompey (K1)

Prithvi (K1)

Ramen (K1)

Rapunzel97 (K1)

Rozay (K1)

SamuelLPlaqson (K1)

Sarang (K1)

Scarlett (K1)

Schmutz (K1)

SgtBeansprout (K1)

Shaobing (K1)

Slimphazie (K1)

Smurfee (K1)

Spock (K1)

Sulley (K1)

Tachez (K1)

TinkerBelle (K1)

TreyKay (K1)

Urkel (K1)

Validus (K1)

Veliki (K1)

Vidiian (K1)

Wilota (K1)

YoureAdopted (K1)

Yunkel11 (K1)

Zavala (K1)

BontFonne (K2)

BoostSeason (K2)

Cygnus24 (K2)

DismalFunk (K2)

DismalStressor (K2)

Findley (K2)

Hyperbowlee (K2)

Marcoliusprime (K2)

Milly (K2)

Mufasa (K2)

Persephone (K2)

TM4 (K2)

Uncooperative (K2)

Zigg (K2)

ZoeJ (K2)

Hurricane (K3)

Keshu (K3)

MacnCheese (K3)

Pixie (K3)

RonKinser (K3)

ShedlockHolmes (K3)

TBond007 (K3)

Chancellor (K4)

Cheetobro (K4)

Fionnbharth (K4)

MissDaisy (K4)

Mitti (K4)

Patt (K4)

Reptar3000 (K4)

SamScheppers (K4)

Slarp (K4)

Taquito (K4)

Wintermute (K4)

AlleyCat (K5)

Collard (K5)

Edugator (K5)

Gengar (K5)

Guillsminger (K5)

Kratio (K5)

Larva (K5)

Leston (K5)

NemNuong (K5)

OkiRoe (K5)

Omnicron (K5)

Paola (K5)

Rando14 (K5)

Thyatira (K5)

Waterfoul (K5)

Amgine (K6)

Amohnition (K6)

Bryler (K6)

Cain (K6)

DarthP (K6)

Ekdilam (K6)

Euphorie (K6)

Hammy (K6)

Krueger (K6)

Lazy (K6)

Marshawn (K6)

PhelpsODU (K6)

Phrank (K6)

SirPhilip (K6)

Unicorn (K6)

Ximenita (K6)

Yuna (K6)

Aminay (K7)

Annotation StatusIn GenBank
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

Click to View

Shaobing_1

Shaobing_2

Shaobing_3

Shaobing_4

Shaobing_6

Shaobing_7
(terminase, small subunit)

Shaobing_8
(terminase, large subunit)

Shaobing_9
(portal protein)

Shaobing_10
(capsid maturation protease)

Shaobing_11

Shaobing_12
(scaffolding protein)

Shaobing_13
(major capsid protein)

Shaobing_14
(head-to-tail connector protein)

Shaobing_15
(head-to-tail connector protein)

Shaobing_16
(head-to-tail connector protein)

Shaobing_17
(head-to-tail connector protein)

Shaobing_18
(major tail protein)

Shaobing_19
(tail assembly chaperone)

Shaobing_20
(tail assembly chaperone)

Shaobing_21
(tape measure protein)

Shaobing_22
(minor tail protein)

Shaobing_23
(minor tail protein)

Shaobing_24
(minor tail protein)

Shaobing_25
(minor tail protein)

Shaobing_26
(minor tail protein)

Shaobing_27
(minor tail protein)

Shaobing_28

Shaobing_29

Shaobing_30
(lysin A)

Shaobing_31
(lysin B)

Shaobing_32
(holin)

Shaobing_33

Shaobing_34

Shaobing_35

Shaobing_36

Shaobing_37

Shaobing_38

Shaobing_39

Shaobing_40

Shaobing_41

Shaobing_42

Shaobing_43
(integrase, (Y-int))

Shaobing_44

Shaobing_45
(immunity repressor)

Shaobing_46
(helix-turn-helix DNA binding protein)

Shaobing_47
(HTH DNA binding protein)

Shaobing_48

Shaobing_49

Shaobing_50

Shaobing_51

Shaobing_52
(HTH DNA binding protein)

Shaobing_53
(WhiB family transcription factor)

Shaobing_54

Shaobing_55

Shaobing_56

Shaobing_57

Shaobing_58

Shaobing_59

Shaobing_60
(DnaQ exonuclease)

Shaobing_61

Shaobing_62
(exonuclease)

Shaobing_63

Shaobing_64

Shaobing_65

Shaobing_66

Shaobing_67

Shaobing_68

Shaobing_69
(NrdH glutaredoxin)

Shaobing_70

Shaobing_71
(DNA primase)

Shaobing_72

Shaobing_73

Shaobing_74

Shaobing_75

Shaobing_76

Shaobing_77

Shaobing_78

Shaobing_79
(SprT protease)

Shaobing_80

Shaobing_81

Shaobing_82

Shaobing_83

Shaobing_84

Shaobing_85
(RNA ligase)

Shaobing_86

Shaobing_87

Shaobing_88

Shaobing_89

Shaobing_90

Shaobing_91

Shaobing_92

Shaobing_93

Shaobing_94

Shaobing_95

Shaobing_96
(HNH endonuclease)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMK310138
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 31
Pitt Freezer Box Grid# D9
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload