Mycobacterium phage Atiba
Know something about this phage that we don't? Modify its data.
Detailed Information for Phage Atiba
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByShelby Hartley
Year Found2016
Location FoundHattiesburg, MS USA
Finding InstitutionUniversity of Southern Mississippi
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Unknown
Isolation TemperatureNot entered
GPS Coordinates31.32903 N, 89.333516 W Map
Discovery NotesI found my phage underneath a patch of leaves which was shaded by trees. The soil was damp with lots of debris in it such as twigs and leaves. To collect my soil sample, I moved the leaves and collected the soil directly under the leaves.
Naming NotesI named my phage Atiba after a horse that I used to ride at a summer camp I attended as a child. This horse was there every year and he was my favorite horse to ride. I like his color which reminds of cookies and cream. Also, I just like his name and think it is unique.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedFeb 10, 2017
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage599
Genome length (bp)59556
Character of genome ends3' Sticky Overhang
Overhang Length11 bases
Overhang SequenceCTCGTAGGCAT
GC Content66.5%
Fasta file available?Yes: Download fasta file
Characterization
ClusterK
SubclusterK1
Cluster Life CycleTemperate
Other Cluster Members

Click to View

ActinUp (K1)

Adephagia (K1)

Adonis (K1)

AlishaPH (K1)

Amelie (K1)

Anaya (K1)

Angelica (K1)

Apocalypse (K1)

Atiba (K1)

BarrelRoll (K1)

BEEST (K1)

Beezoo (K1)

Bella96 (K1)

Belladonna (K1)

BGlluviae (K1)

Biglebops (K1)

Capricorn (K1)

Chris (K1)

CREW (K1)

CrimD (K1)

Curiosium (K1)

Dalmuri (K1)

Deby (K1)

DrHayes (K1)

Efra2 (K1)

Emerson (K1)

Enkosi (K1)

Ganymede (K1)

Geraldini (K1)

Guanica15 (K1)

HedwigODU (K1)

Homura (K1)

Hyperbowlee (K1)

Inky (K1)

JAWS (K1)

Jeckyll (K1)

Joy99 (K1)

KiSi (K1)

LastHope (K1)

LaterM (K1)

LeMond (K1)

LilPharaoh (K1)

LindNT (K1)

MarkPhew (K1)

Mdavu (K1)

Murucutumbu (K1)

Mynx (K1)

Nibb (K1)

Niklas (K1)

Nutello (K1)

Oscar (K1)

Padfoot (K1)

Peanam (K1)

Peel (K1)

Piatt (K1)

Prithvi (K1)

QuincyRose (K1)

Ramen (K1)

Rapunzel97 (K1)

SamuelLPlaqson (K1)

Scarlett (K1)

SgtBeansprout (K1)

Shaobing (K1)

Slimphazie (K1)

Spock (K1)

Sulley (K1)

Tachez (K1)

TreyKay (K1)

Twitch (K1)

Urkel (K1)

Validus (K1)

Veliki (K1)

YoureAdopted (K1)

Yunkel11 (K1)

Zavala (K1)

BoostSeason (K2)

DismalFunk (K2)

DismalStressor (K2)

Findley (K2)

Marcoliusprime (K2)

Milly (K2)

Mufasa (K2)

TM4 (K2)

ZoeJ (K2)

Hurricane (K3)

Keshu (K3)

MacnCheese (K3)

Pixie (K3)

ShedlockHolmes (K3)

TBond007 (K3)

Boilgate (K4)

Chancellor (K4)

Cheetobro (K4)

Fionnbharth (K4)

JF1 (K4)

Juliette (K4)

Malthus (K4)

MissDaisy (K4)

Mitti (K4)

Patt (K4)

Reptar3000 (K4)

Ruthiejr (K4)

SamScheppers (K4)

Slarp (K4)

Taquito (K4)

Wintermute (K4)

AlleyCat (K5)

Collard (K5)

Edugator (K5)

Gengar (K5)

Guillsminger (K5)

Kratio (K5)

Larva (K5)

Leston (K5)

OkiRoe (K5)

Omnicron (K5)

Paola (K5)

Rando14 (K5)

Thyatira (K5)

Waterfoul (K5)

Amgine (K6)

Amohnition (K6)

Bryler (K6)

Cain (K6)

DarthP (K6)

Ekdilam (K6)

Hammy (K6)

Krueger (K6)

Marshawn (K6)

PhelpsODU (K6)

Phrank (K6)

SirPhilip (K6)

Unicorn (K6)

Ximenita (K6)

Yuna (K6)

Aminay (K7)

Annotating InstitutionUniversity of Pittsburgh
Annotation StatusIn GenBank
Plaque NotesMy plaques were around 6mm in diameter, turbid and circular. Some had bullseyes in the center. All of my plaques were around the same size.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

Click to View

Atiba_1

Atiba_2

Atiba_3
(AAA-ATPase)

Atiba_4

Atiba_6

Atiba_7

Atiba_8
(terminase)

Atiba_9
(portal protein)

Atiba_10
(MuF-like minor capsid protein)

Atiba_11

Atiba_12
(scaffolding protein)

Atiba_13
(major capsid protein)

Atiba_14
(head-to-tail adaptor)

Atiba_15
(head-to-tail stopper)

Atiba_16

Atiba_17
(tail terminator)

Atiba_18
(major tail protein)

Atiba_19
(tail assembly chaperone)

Atiba_20
(tail assembly chaperone)

Atiba_21
(tape measure protein)

Atiba_22
(minor tail protein)

Atiba_23
(minor tail protein)

Atiba_24
(minor tail protein)

Atiba_25
(minor tail protein)

Atiba_26

Atiba_27
(minor tail protein)

Atiba_28
(minor tail protein)

Atiba_29

Atiba_30
(lysin A)

Atiba_31
(lysin B)

Atiba_32
(holin)

Atiba_33
(membrane protein)

Atiba_34

Atiba_35
(phosphodiesterase)

Atiba_36
(helix-turn-helix DNA binding domain protein)

Atiba_37

Atiba_38

Atiba_39

Atiba_40
(membrane protein)

Atiba_41
(tyrosine integrase)

Atiba_42
(membrane protein)

Atiba_43
(immunity repressor)

Atiba_44
(helix-turn-helix DNA binding domain protein)

Atiba_45
(helix-turn-helix DNA binding domain protein)

Atiba_46

Atiba_47

Atiba_48
(membrane protein)

Atiba_49

Atiba_50
(helix-turn-helix DNA binding domain protein)

Atiba_51
(WhiB family transcription factor)

Atiba_52

Atiba_53

Atiba_54

Atiba_55

Atiba_56

Atiba_57

Atiba_58
(DnaQ-like (DNA polymerase III subunit))

Atiba_59

Atiba_60

Atiba_61

Atiba_62
(exonuclease)

Atiba_63

Atiba_64

Atiba_65

Atiba_66

Atiba_67
(NrdH-like glutaredoxin)

Atiba_68

Atiba_69
(HNH endonuclease)

Atiba_70
(DNA primase/helicase)

Atiba_71

Atiba_72
(RusA-like resolvase (endonuclease))

Atiba_73

Atiba_74
(peptidase)

Atiba_75

Atiba_76

Atiba_77
(SprT-like protease)

Atiba_78

Atiba_79

Atiba_80
(helix-turn-helix DNA binding domain protein)

Atiba_81

Atiba_82

Atiba_83

Atiba_84

Atiba_85

Atiba_86
(rtcB-like RNA ligase)

Atiba_87

Atiba_88

Atiba_89

Atiba_90

Atiba_91

Atiba_92

Atiba_93

Atiba_94

Atiba_95

Atiba_96

Atiba_97
(HNH endonuclease)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMN234230
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 33
Pitt Freezer Box Grid# H1
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
Final DNAMaster FileDownload
GenBank File for PhameratorDownload