Mycobacterium phage Efra2
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Detailed Information for Phage Efra2
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByJosé Efraín Berríos
Year Found2012
Location FoundGuanica, PR
Finding InstitutionUniversity of Puerto Rico at Cayey
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates17.958478 N, 66.863736 W Map
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJun 30, 2015
Sequencing FacilityNC State Genomic Sciences Laboratory
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage2414
Genome length (bp)61284
Character of genome ends3' Sticky Overhang
Overhang Length11 bases
Overhang SequenceCTCGTAGGCAT
GC Content66.6%
Fasta file available?Yes: Download fasta file
Characterization
ClusterK
SubclusterK1
Cluster Life CycleTemperate
Other Cluster Members

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ActinUp (K1)

Adephagia (K1)

Adonis (K1)

AlishaPH (K1)

Amelie (K1)

Anaya (K1)

Angelica (K1)

Apocalypse (K1)

Asayake (K1)

Atiba (K1)

BaghaKamala (K1)

BarrelRoll (K1)

BEEST (K1)

Beezoo (K1)

Bella96 (K1)

Belladonna (K1)

BGlluviae (K1)

Biglebops (K1)

Blizzard (K1)

Boiiii (K1)

Capricorn (K1)

CaseJules (K1)

Chris (K1)

CREW (K1)

CrimD (K1)

Curiosium (K1)

Dalmuri (K1)

Deby (K1)

Devera (K1)

Dole (K1)

DrHayes (K1)

Durfee (K1)

Efra2 (K1)

Emerson (K1)

Enkosi (K1)

Ganymede (K1)

Geraldini (K1)

Guanica15 (K1)

HedwigODU (K1)

Homura (K1)

Hyperbowlee (K1)

Illumine (K1)

Inky (K1)

Jarvi (K1)

JAWS (K1)

Jeckyll (K1)

Joy99 (K1)

KiSi (K1)

LastHope (K1)

LaterM (K1)

LeMond (K1)

LilPharaoh (K1)

LindNT (K1)

MarkPhew (K1)

Mdavu (K1)

MeaningOfLife (K1)

Murucutumbu (K1)

Mynx (K1)

Nibb (K1)

Nikao (K1)

Niklas (K1)

Nutello (K1)

Oscar (K1)

Padfoot (K1)

Padpat (K1)

Peanam (K1)

Peel (K1)

Piatt (K1)

Pokerus (K1)

Prithvi (K1)

QuincyRose (K1)

Ramen (K1)

Rapunzel97 (K1)

SamuelLPlaqson (K1)

Scarlett (K1)

SgtBeansprout (K1)

Shaobing (K1)

ShiaSurprise (K1)

Slimphazie (K1)

Spock (K1)

Stinson (K1)

Sulley (K1)

Tachez (K1)

TreyKay (K1)

Twitch (K1)

Urkel (K1)

Validus (K1)

Veliki (K1)

YoureAdopted (K1)

Yunkel11 (K1)

Zavala (K1)

BoostSeason (K2)

DismalFunk (K2)

DismalStressor (K2)

Findley (K2)

Marcoliusprime (K2)

Milly (K2)

Mufasa (K2)

TM4 (K2)

ZoeJ (K2)

Hurricane (K3)

Keshu (K3)

MacnCheese (K3)

Pixie (K3)

ShedlockHolmes (K3)

TBond007 (K3)

Boilgate (K4)

Chancellor (K4)

Cheetobro (K4)

Eponine (K4)

Fionnbharth (K4)

JF1 (K4)

Juliette (K4)

Malthus (K4)

MissDaisy (K4)

Mitti (K4)

Patt (K4)

Reptar3000 (K4)

Ruthiejr (K4)

SamScheppers (K4)

Slarp (K4)

Taquito (K4)

Wintermute (K4)

AlleyCat (K5)

Collard (K5)

Edugator (K5)

Gengar (K5)

Guillsminger (K5)

InvictusManeo (K5)

Kratio (K5)

Larva (K5)

Leston (K5)

OkiRoe (K5)

Omnicron (K5)

Paola (K5)

Psycho (K5)

Rando14 (K5)

SoSeph (K5)

Thyatira (K5)

Waterfoul (K5)

Amgine (K6)

Amohnition (K6)

Bryler (K6)

Cain (K6)

DarthP (K6)

Ekdilam (K6)

Ellie (K6)

Fefferhead (K6)

Hammy (K6)

Krueger (K6)

Marshawn (K6)

PhelpsODU (K6)

Phrank (K6)

SirPhilip (K6)

Unicorn (K6)

Ximenita (K6)

Yuna (K6)

Aminay (K7)

Annotating InstitutionUniversity of Pittsburgh
Annotation StatusIn GenBank
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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Efra2_1

Efra2_2

Efra2_3
(DNA binding protein)

Efra2_4

Efra2_6

Efra2_7

Efra2_8
(terminase)

Efra2_9
(portal protein)

Efra2_10
(MuF-like minor capsid protein)

Efra2_11

Efra2_12
(scaffolding protein)

Efra2_13
(major capsid protein)

Efra2_14
(head-to-tail adaptor)

Efra2_15
(head-to-tail stopper)

Efra2_16

Efra2_17
(tail terminator)

Efra2_18

Efra2_19

Efra2_20

Efra2_21
(tape measure protein)

Efra2_22
(minor tail protein)

Efra2_23
(minor tail protein)

Efra2_24
(minor tail protein)

Efra2_25
(minor tail protein)

Efra2_26

Efra2_27
(minor tail protein)

Efra2_28
(minor tail protein)

Efra2_29

Efra2_30
(lysin A)

Efra2_31
(lysin B)

Efra2_32
(holin)

Efra2_33

Efra2_34

Efra2_35
(MRE11 double-strand break endo/exonuclease)

Efra2_36

Efra2_37

Efra2_38

Efra2_39

Efra2_40

Efra2_41

Efra2_42

Efra2_43

Efra2_44
(tyrosine integrase)

Efra2_45

Efra2_46
(immunity repressor)

Efra2_47
(excise)

Efra2_48

Efra2_49

Efra2_50

Efra2_51

Efra2_52
(MerR-like helix-turn-helix DNA binding domain protein)

Efra2_53
(WhiB family transcription factor)

Efra2_54

Efra2_55

Efra2_56

Efra2_57

Efra2_58

Efra2_59

Efra2_60
(DnaE-like DNA polymerase III)

Efra2_61

Efra2_62

Efra2_63

Efra2_64

Efra2_65
(Cas4 family endonuclease)

Efra2_66

Efra2_67

Efra2_68

Efra2_69

Efra2_70

Efra2_71

Efra2_72
(NrdH-like glutaredoxin)

Efra2_73
(HNH endonuclease)

Efra2_74
(DNA primase/helicase)

Efra2_75

Efra2_76
(RusA-like resolvase)

Efra2_77

Efra2_78

Efra2_79

Efra2_80

Efra2_81

Efra2_82

Efra2_83
(SprT-like protease)

Efra2_84

Efra2_85

Efra2_86

Efra2_87

Efra2_88

Efra2_89

Efra2_90
(polynucleotide kinase)

Efra2_91
(RtcB-like RNA ligase)

Efra2_92

Efra2_93

Efra2_94

Efra2_95

Efra2_96

Efra2_97

Efra2_98

Efra2_99

Efra2_100

Efra2_101

Efra2_102

Efra2_103

Efra2_104
(HNH endonuclease)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMN234174
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 40
Pitt Freezer Box Grid# 41
Available Files
Final DNAMaster FileDownload
GenBank File for PhameratorDownload