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Mycobacterium phage Emerson
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Detailed Information for Phage Emerson
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByKaren Cohen
Year Found2013
Location FoundPittsburgh, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates40.44659 N, 80.003922 W Map
Naming NotesI just kinda like the name.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedNov 13, 2013
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage9726
Genome length (bp)60310
Character of genome ends3' Sticky Overhang
Overhang Length11 bases
Overhang SequenceCTCGTAGGCAT
GC Content66.6%
Fasta file available?Yes: Download fasta file
Characterization
ClusterK
SubclusterK1
Cluster Life CycleTemperate
Other Cluster Members

Click to View

ActinUp (K1)

Adephagia (K1)

Adonis (K1)

AlishaPH (K1)

Amelie (K1)

Anaya (K1)

Angelica (K1)

Apocalypse (K1)

Atiba (K1)

BarrelRoll (K1)

BEEST (K1)

Beezoo (K1)

Bella96 (K1)

Belladonna (K1)

BGlluviae (K1)

Biglebops (K1)

Capricorn (K1)

Chris (K1)

CREW (K1)

CrimD (K1)

Curiosium (K1)

Dalmuri (K1)

Deby (K1)

DrHayes (K1)

Efra2 (K1)

Emerson (K1)

Enkosi (K1)

Ganymede (K1)

Geraldini (K1)

Guanica15 (K1)

HedwigODU (K1)

Homura (K1)

Hyperbowlee (K1)

Inky (K1)

JAWS (K1)

Jeckyll (K1)

Joy99 (K1)

KiSi (K1)

LastHope (K1)

LaterM (K1)

LeMond (K1)

LilPharaoh (K1)

LindNT (K1)

MarkPhew (K1)

Mdavu (K1)

Murucutumbu (K1)

Mynx (K1)

Nibb (K1)

Niklas (K1)

Nutello (K1)

Oscar (K1)

Padfoot (K1)

Peanam (K1)

Peel (K1)

Piatt (K1)

Prithvi (K1)

QuincyRose (K1)

Ramen (K1)

Rapunzel97 (K1)

SamuelLPlaqson (K1)

Scarlett (K1)

SgtBeansprout (K1)

Shaobing (K1)

Slimphazie (K1)

Spock (K1)

Sulley (K1)

Tachez (K1)

TreyKay (K1)

Twitch (K1)

Urkel (K1)

Validus (K1)

Veliki (K1)

YoureAdopted (K1)

Yunkel11 (K1)

Zavala (K1)

BoostSeason (K2)

DismalFunk (K2)

DismalStressor (K2)

Findley (K2)

Marcoliusprime (K2)

Milly (K2)

Mufasa (K2)

TM4 (K2)

ZoeJ (K2)

Hurricane (K3)

Keshu (K3)

MacnCheese (K3)

Pixie (K3)

ShedlockHolmes (K3)

TBond007 (K3)

Boilgate (K4)

Chancellor (K4)

Cheetobro (K4)

Eponine (K4)

Fionnbharth (K4)

JF1 (K4)

Juliette (K4)

Malthus (K4)

MissDaisy (K4)

Mitti (K4)

Patt (K4)

Reptar3000 (K4)

Ruthiejr (K4)

SamScheppers (K4)

Slarp (K4)

Taquito (K4)

Wintermute (K4)

AlleyCat (K5)

Collard (K5)

Edugator (K5)

Gengar (K5)

Guillsminger (K5)

Kratio (K5)

Larva (K5)

Leston (K5)

OkiRoe (K5)

Omnicron (K5)

Paola (K5)

Rando14 (K5)

Thyatira (K5)

Waterfoul (K5)

Amgine (K6)

Amohnition (K6)

Bryler (K6)

Cain (K6)

DarthP (K6)

Ekdilam (K6)

Hammy (K6)

Krueger (K6)

Marshawn (K6)

PhelpsODU (K6)

Phrank (K6)

SirPhilip (K6)

Unicorn (K6)

Ximenita (K6)

Yuna (K6)

Aminay (K7)

Annotating InstitutionUnknown or unassigned
Annotation StatusIn GenBank
Plaque NotesVery large, cloudy plaques.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

Click to View

Emerson_1

Emerson_2

Emerson_3

Emerson_4

Emerson_6

Emerson_7

Emerson_8
(terminase)

Emerson_9
(portal)

Emerson_10
(capsid maturation protease)

Emerson_11

Emerson_12
(scaffolding protein)

Emerson_13
(major capsid protein)

Emerson_14
(head-to-tail adaptor)

Emerson_15
(head-to-tail stopper)

Emerson_16

Emerson_17
(tail terminator)

Emerson_18
(major tail subunit)

Emerson_19
(tail assembly chaperone)

Emerson_20
(tail assembly chaperone)

Emerson_21
(tapemeasure)

Emerson_22
(minor tail protein)

Emerson_23
(minor tail protein)

Emerson_24
(minor tail protein)

Emerson_25
(minor tail protein)

Emerson_26
(minor tail protein)

Emerson_27
(minor tail protein)

Emerson_28
(minor tail protein)

Emerson_29

Emerson_30
(lysin A)

Emerson_31
(lysin B)

Emerson_32
(holin)

Emerson_33

Emerson_34

Emerson_35

Emerson_36

Emerson_37

Emerson_38

Emerson_39

Emerson_40

Emerson_41

Emerson_42
(intergrase)

Emerson_43

Emerson_44
(immunity repressor)

Emerson_45
(Cro)

Emerson_46
(excise)

Emerson_47

Emerson_48

Emerson_49

Emerson_50
(WhiB)

Emerson_51

Emerson_52

Emerson_53

Emerson_54

Emerson_55

Emerson_56

Emerson_57

Emerson_58
(DnaQ)

Emerson_59

Emerson_60

Emerson_61

Emerson_62

Emerson_63

Emerson_64

Emerson_65

Emerson_66

Emerson_67

Emerson_68
(NrdH)

Emerson_69

Emerson_70

Emerson_71
(primase)

Emerson_72

Emerson_73
(RusA)

Emerson_74

Emerson_75

Emerson_76
(peptidase)

Emerson_77

Emerson_78

Emerson_79
(SprT)

Emerson_80

Emerson_81

Emerson_82

Emerson_83

Emerson_84

Emerson_85

Emerson_86

Emerson_87
(RtcB)

Emerson_88

Emerson_89

Emerson_90

Emerson_91

Emerson_92

Emerson_93

Emerson_94

Emerson_95

Emerson_96

Emerson_97

Emerson_98

Emerson_99

Emerson_100

Emerson_101
(HNH endonuclease)

Publication Info
Uploaded to GenBank?Yes
GenBank AccessionKJ567045
Refseq NumberNone yet
Published in PaperPope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity
Archiving Info
Archiving status Archived
Pitt Freezer Box# 1
Pitt Freezer Box Grid# A7
Available Files
Plaque PictureDownload
EM PictureDownload