The Actinobacteriophage Database

Mycobacterium phage Emerson

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Detailed Information for Phage Emerson
Discovery Information
Isolation Host	Mycobacterium smegmatis mc²155
Found By	Karen Cohen
Year Found	2013
Location Found	Pittsburgh, PA USA
Finding Institution	University of Pittsburgh
Program	Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?	Yes
Isolation Temperature	Not entered
GPS Coordinates	40.44659 N, 80.003922 W Map
Naming Notes	I just kinda like the name.
Sequencing Information
Sequencing Complete?	Yes
Date Sequencing Completed	Nov 13, 2013
Sequencing Facility	Pittsburgh Bacteriophage Institute
Shotgun Sequencing Method	Illumina Sequencing
Approximate Shotgun Coverage	9726
Genome length (bp)	60310
Character of genome ends	3' Sticky Overhang
Overhang Length	11 bases
Overhang Sequence	CTCGTAGGCAT
GC Content	66.6%
Fasta file available?	Yes: Download fasta file
Characterization
Cluster	K
Subcluster	K1
Cluster Life Cycle	Temperate
Other Cluster Members	Click to View ActinUp (K1) Adephagia (K1) Adonis (K1) Ageofdapage (K1) AlishaPH (K1) Amelie (K1) Anaya (K1) Angelica (K1) Apocalypse (K1) Asayake (K1) Atiba (K1) BaghaKamala (K1) BarrelRoll (K1) BEEST (K1) Beezoo (K1) Bella96 (K1) Belladonna (K1) BGlluviae (K1) Biglebops (K1) Blizzard (K1) Boiiii (K1) Capricorn (K1) CaseJules (K1) CheetoDust (K1) Chris (K1) CREW (K1) CrimD (K1) Curiosium (K1) Dalmuri (K1) Deby (K1) Devera (K1) Dole (K1) DrHayes (K1) Durfee (K1) Efra2 (K1) Emerson (K1) Enkosi (K1) Ganymede (K1) Geraldini (K1) Guanica15 (K1) HedwigODU (K1) Homura (K1) Hyperbowlee (K1) Illumine (K1) Inky (K1) Jarvi (K1) JAWS (K1) Jayhawk (K1) Jeckyll (K1) Joy99 (K1) KiSi (K1) LastHope (K1) LaterM (K1) LeMond (K1) LilPharaoh (K1) LindNT (K1) Llorens (K1) Lunahalos (K1) MarkPhew (K1) Mdavu (K1) MeaningOfLife (K1) Megsy (K1) Murucutumbu (K1) Mynx (K1) Nibb (K1) Nikao (K1) Niklas (K1) Nutello (K1) Oscar (K1) Padfoot (K1) Padpat (K1) Peanam (K1) Peel (K1) Piatt (K1) Pokerus (K1) Prithvi (K1) QuincyRose (K1) Ramen (K1) Rapunzel97 (K1) Rosmarinus (K1) SamuelLPlaqson (K1) Scarlett (K1) SgtBeansprout (K1) Shaobing (K1) ShiaSurprise (K1) Slimphazie (K1) Spock (K1) Stinson (K1) Sulley (K1) Tachez (K1) TaiwanKao (K1) TiniBug (K1) Tiri (K1) Topper (K1) TreyKay (K1) TruffulaTree (K1) Twitch (K1) Urkel (K1) Validus (K1) Veliki (K1) YoureAdopted (K1) Yunkel11 (K1) Zabiza (K1) Zavala (K1) BoostSeason (K2) DismalFunk (K2) DismalStressor (K2) Findley (K2) Marcoliusprime (K2) Milly (K2) Mufasa (K2) Strobilo (K2) TM4 (K2) ZoeJ (K2) Hurricane (K3) Keshu (K3) MacnCheese (K3) Pharb (K3) Pixie (K3) ShedlockHolmes (K3) TBond007 (K3) TribleTrouble (K3) Chancellor (K4) Cheetobro (K4) Eponine (K4) Fionnbharth (K4) JF1 (K4) Juliette (K4) Malthus (K4) MissDaisy (K4) Mitti (K4) OmniCritical (K4) Patt (K4) Reptar3000 (K4) Ruthiejr (K4) SamScheppers (K4) Slarp (K4) Taquito (K4) Wintermute (K4) Agent47 (K5) AlleyCat (K5) Collard (K5) Dadosky (K5) Edugator (K5) Feyre (K5) Gengar (K5) Guillsminger (K5) Heftyboy (K5) InvictusManeo (K5) Kratio (K5) Larva (K5) Leston (K5) Miryou (K5) OkiRoe (K5) Omnicron (K5) Paola (K5) Psycho (K5) Rando14 (K5) SoSeph (K5) Thyatira (K5) Waterfoul (K5) Amgine (K6) Amohnition (K6) Bryler (K6) Cain (K6) DarthP (K6) Ekdilam (K6) Ellie (K6) Fefferhead (K6) Hammy (K6) Krueger (K6) Marshawn (K6) PhelpsODU (K6) Phrank (K6) Shadow1 (K6) SirPhilip (K6) Sunflower1121 (K6) Syra333 (K6) TClif (K6) Tierra (K6) Unicorn (K6) Ximenita (K6) Yuna (K6) Aminay (K7) Boilgate (K8)
Annotating Institution	Unknown or unassigned
Annotation Status	In GenBank
Plaque Notes	Very large, cloudy plaques.
Morphotype	Siphoviridae
Has been Phamerated?	Yes
Gene List	Click to View Emerson_1 Emerson_2 Emerson_3 Emerson_4 Emerson_6 Emerson_7 Emerson_8 (terminase) Emerson_9 (portal protein) Emerson_10 (MuF-like minor capsid protein) Emerson_11 Emerson_12 (scaffolding protein) Emerson_13 (major capsid protein) Emerson_14 (head-to-tail adaptor) Emerson_15 (head-to-tail stopper) Emerson_16 Emerson_17 (tail terminator) Emerson_18 Emerson_20 Emerson_19 Emerson_21 (tape measure protein) Emerson_22 (minor tail protein) Emerson_23 (minor tail protein) Emerson_24 (minor tail protein) Emerson_25 (minor tail protein) Emerson_26 (minor tail protein) Emerson_27 (minor tail protein) Emerson_28 (minor tail protein) Emerson_29 Emerson_30 (lysin A) Emerson_31 (lysin B) Emerson_32 (holin) Emerson_33 Emerson_34 Emerson_35 Emerson_36 Emerson_37 Emerson_38 Emerson_39 Emerson_40 Emerson_41 Emerson_42 (tyrosine integrase) Emerson_43 Emerson_44 (immunity repressor) Emerson_45 (helix-turn-helix DNA binding protein) Emerson_46 (excise) Emerson_47 Emerson_48 Emerson_49 Emerson_50 (MerR-like helix-turn-helix DNA binding domain protein) Emerson_51 Emerson_52 Emerson_53 Emerson_54 Emerson_55 Emerson_56 Emerson_57 Emerson_58 (DnaE-like DNA polymerase III) Emerson_59 Emerson_60 Emerson_61 Emerson_62 Emerson_63 Emerson_64 Emerson_65 Emerson_66 Emerson_67 Emerson_68 (NrdH-like glutaredoxin) Emerson_69 Emerson_70 Emerson_71 (DNA primase/helicase) Emerson_72 Emerson_73 (RusA-like resolvase) Emerson_74 Emerson_75 Emerson_76 Emerson_77 Emerson_78 Emerson_79 (SprT-like protease) Emerson_80 Emerson_81 Emerson_82 Emerson_83 Emerson_84 Emerson_85 Emerson_86 Emerson_87 (RtcB-like RNA ligase) Emerson_88 Emerson_89 Emerson_90 Emerson_91 Emerson_92 Emerson_93 Emerson_94 Emerson_95 Emerson_96 Emerson_97 Emerson_98 Emerson_99 Emerson_100 Emerson_101 (HNH endonuclease)
Publication Info
Uploaded to GenBank?	Yes
GenBank Accession	KJ567045
Refseq Number	None yet
Published in Paper	Pope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity
Archiving Info
Archiving status	Archived
Pitt Freezer Box#	1
Pitt Freezer Box Grid#	A7
Available Files
Plaque Picture	Download
EM Picture	Download

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