Mycobacterium phage Geraldini
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Detailed Information for Phage Geraldini
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByBillie Cullison & Xela Miller
Year Found2015
Location FoundNorthampton, MA USA
Finding InstitutionSmith College
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates42.3183 N, 72.6406 W Map
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedMar 4, 2016
Sequencing FacilitySmith College
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage348
Genome length (bp)59818
Character of genome ends3' Sticky Overhang
Overhang Length11 bases
Overhang SequenceCTCGTAGGCAT
GC Content66.6%
Fasta file available?Yes: Download fasta file
Characterization
ClusterK
SubclusterK1
Cluster Life CycleTemperate
Other Cluster Members

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ActinUp (K1)

Adephagia (K1)

Adonis (K1)

AlishaPH (K1)

Amelie (K1)

Anaya (K1)

Angelica (K1)

Apocalypse (K1)

Asayake (K1)

Atiba (K1)

BaghaKamala (K1)

BarrelRoll (K1)

BEEST (K1)

Beezoo (K1)

Bella96 (K1)

Belladonna (K1)

BGlluviae (K1)

Biglebops (K1)

Blizzard (K1)

Boiiii (K1)

Capricorn (K1)

CaseJules (K1)

Chris (K1)

CREW (K1)

CrimD (K1)

Curiosium (K1)

Dalmuri (K1)

Deby (K1)

Devera (K1)

Dole (K1)

DrHayes (K1)

Durfee (K1)

Efra2 (K1)

Emerson (K1)

Enkosi (K1)

Ganymede (K1)

Geraldini (K1)

Guanica15 (K1)

HedwigODU (K1)

Homura (K1)

Hyperbowlee (K1)

Illumine (K1)

Inky (K1)

Jarvi (K1)

JAWS (K1)

Jeckyll (K1)

Joy99 (K1)

KiSi (K1)

LastHope (K1)

LaterM (K1)

LeMond (K1)

LilPharaoh (K1)

LindNT (K1)

MarkPhew (K1)

Mdavu (K1)

MeaningOfLife (K1)

Murucutumbu (K1)

Mynx (K1)

Nibb (K1)

Nikao (K1)

Niklas (K1)

Nutello (K1)

Oscar (K1)

Padfoot (K1)

Padpat (K1)

Peanam (K1)

Peel (K1)

Piatt (K1)

Pokerus (K1)

Prithvi (K1)

QuincyRose (K1)

Ramen (K1)

Rapunzel97 (K1)

SamuelLPlaqson (K1)

Scarlett (K1)

SgtBeansprout (K1)

Shaobing (K1)

ShiaSurprise (K1)

Slimphazie (K1)

Spock (K1)

Stinson (K1)

Sulley (K1)

Tachez (K1)

TreyKay (K1)

Twitch (K1)

Urkel (K1)

Validus (K1)

Veliki (K1)

YoureAdopted (K1)

Yunkel11 (K1)

Zavala (K1)

BoostSeason (K2)

DismalFunk (K2)

DismalStressor (K2)

Findley (K2)

Marcoliusprime (K2)

Milly (K2)

Mufasa (K2)

TM4 (K2)

ZoeJ (K2)

Hurricane (K3)

Keshu (K3)

MacnCheese (K3)

Pixie (K3)

ShedlockHolmes (K3)

TBond007 (K3)

Boilgate (K4)

Chancellor (K4)

Cheetobro (K4)

Eponine (K4)

Fionnbharth (K4)

JF1 (K4)

Juliette (K4)

Malthus (K4)

MissDaisy (K4)

Mitti (K4)

Patt (K4)

Reptar3000 (K4)

Ruthiejr (K4)

SamScheppers (K4)

Slarp (K4)

Taquito (K4)

Wintermute (K4)

AlleyCat (K5)

Collard (K5)

Edugator (K5)

Gengar (K5)

Guillsminger (K5)

InvictusManeo (K5)

Kratio (K5)

Larva (K5)

Leston (K5)

OkiRoe (K5)

Omnicron (K5)

Paola (K5)

Psycho (K5)

Rando14 (K5)

SoSeph (K5)

Thyatira (K5)

Waterfoul (K5)

Amgine (K6)

Amohnition (K6)

Bryler (K6)

Cain (K6)

DarthP (K6)

Ekdilam (K6)

Ellie (K6)

Fefferhead (K6)

Hammy (K6)

Krueger (K6)

Marshawn (K6)

PhelpsODU (K6)

Phrank (K6)

SirPhilip (K6)

Unicorn (K6)

Ximenita (K6)

Yuna (K6)

Aminay (K7)

Annotating InstitutionUniversity of Pittsburgh
Annotation StatusIn GenBank
Plaque NotesMultiple morphology, temperate phage because of cloudiness.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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Geraldini_1

Geraldini_2

Geraldini_3
(DNA binding protein)

Geraldini_4

Geraldini_6

Geraldini_7

Geraldini_8
(terminase)

Geraldini_9
(portal protein)

Geraldini_10
(MuF-like minor capsid protein)

Geraldini_11

Geraldini_12
(scaffolding protein)

Geraldini_13
(major capsid protein)

Geraldini_14
(head-to-tail adaptor)

Geraldini_15
(head-to-tail stopper)

Geraldini_16

Geraldini_17
(tail terminator)

Geraldini_18

Geraldini_19

Geraldini_20

Geraldini_21
(tape measure protein)

Geraldini_22
(minor tail protein)

Geraldini_23
(minor tail protein)

Geraldini_24
(minor tail protein)

Geraldini_25
(minor tail protein)

Geraldini_26

Geraldini_27
(minor tail protein)

Geraldini_28
(minor tail protein)

Geraldini_29

Geraldini_30
(lysin A)

Geraldini_31
(lysin B)

Geraldini_32
(holin)

Geraldini_33

Geraldini_34

Geraldini_35
(MRE11 double-strand break endo/exonuclease)

Geraldini_36

Geraldini_37

Geraldini_38

Geraldini_39

Geraldini_40
(queuine tRNA-ribosyltransferase)

Geraldini_41

Geraldini_42

Geraldini_43
(tyrosine integrase)

Geraldini_44

Geraldini_45
(immunity repressor)

Geraldini_46
(helix-turn-helix DNA binding protein)

Geraldini_47
(excise)

Geraldini_48

Geraldini_49

Geraldini_50

Geraldini_51

Geraldini_52
(MerR-like helix-turn-helix DNA binding domain protein)

Geraldini_53
(WhiB family transcription factor)

Geraldini_54

Geraldini_55

Geraldini_56

Geraldini_57

Geraldini_58

Geraldini_59

Geraldini_60
(DnaE-like DNA polymerase III)

Geraldini_61

Geraldini_62

Geraldini_63

Geraldini_64
(Cas4 family endonuclease)

Geraldini_65

Geraldini_66

Geraldini_67

Geraldini_68

Geraldini_69
(NrdH-like glutaredoxin)

Geraldini_70

Geraldini_71
(HNH endonuclease)

Geraldini_72
(DNA primase/helicase)

Geraldini_73

Geraldini_74
(RusA-like resolvase)

Geraldini_75

Geraldini_76

Geraldini_77

Geraldini_78

Geraldini_79

Geraldini_80

Geraldini_81

Geraldini_82

Geraldini_83

Geraldini_84

Geraldini_85

Geraldini_86

Geraldini_87
(RtcB-like RNA ligase)

Geraldini_88

Geraldini_89

Geraldini_90

Geraldini_91

Geraldini_92

Geraldini_93

Geraldini_94

Geraldini_95

Geraldini_96

Geraldini_97
(HNH endonuclease)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMN234182
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 23
Pitt Freezer Box Grid# F6
Available Files
Plaque PictureDownload
EM PictureDownload
Final DNAMaster FileDownload
GenBank File for PhameratorDownload