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Schueller (B1) Casbah (B3) Tiri (K1) Mopey (D1) Ligma (DR)
Mycobacterium phage SoSeph
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Detailed Information for Phage SoSeph
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByJoseph Le and Sophia Barrows
Year Found2016
Location FoundSpokane, WA USA
Finding InstitutionGonzaga University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature22°C
GPS Coordinates47.668056 N, 117.403611 W Map
Discovery NotesThere was an earthworm inside our soil sample and we killed it and then put it in.

The weather was raining at 59° F

Found at 12:00pm at an elevation of 1910ft
Naming NotesThe name came from combining the first name of my lab partners name and I because we couldn't think of anything clever.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 15, 2021
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage95
Genome length (bp)61968
Character of genome ends3' Sticky Overhang
Overhang Length11 bases
Overhang SequenceCTCAGTGGCAT
GC Content65.0%
Fasta file available?Yes: Download fasta file
Characterization
ClusterK
SubclusterK5
Cluster Life CycleTemperate
Other Cluster Members

Click to View

ActinUp (K1)

Adephagia (K1)

Adonis (K1)

AlishaPH (K1)

Amelie (K1)

Anaya (K1)

Angelica (K1)

Apocalypse (K1)

Asayake (K1)

Atiba (K1)

BaghaKamala (K1)

BarrelRoll (K1)

BEEST (K1)

Beezoo (K1)

Bella96 (K1)

Belladonna (K1)

BGlluviae (K1)

Biglebops (K1)

Blizzard (K1)

Boiiii (K1)

Capricorn (K1)

CaseJules (K1)

Chris (K1)

CREW (K1)

CrimD (K1)

Curiosium (K1)

Dalmuri (K1)

Deby (K1)

Devera (K1)

Dole (K1)

DrHayes (K1)

Durfee (K1)

Efra2 (K1)

Emerson (K1)

Enkosi (K1)

Ganymede (K1)

Geraldini (K1)

Guanica15 (K1)

HedwigODU (K1)

Homura (K1)

Hyperbowlee (K1)

Illumine (K1)

Inky (K1)

Jarvi (K1)

JAWS (K1)

Jeckyll (K1)

Joy99 (K1)

KiSi (K1)

LastHope (K1)

LaterM (K1)

LeMond (K1)

LilPharaoh (K1)

LindNT (K1)

MarkPhew (K1)

Mdavu (K1)

MeaningOfLife (K1)

Murucutumbu (K1)

Mynx (K1)

Nibb (K1)

Nikao (K1)

Niklas (K1)

Nutello (K1)

Oscar (K1)

Padfoot (K1)

Padpat (K1)

Peanam (K1)

Peel (K1)

Piatt (K1)

Pokerus (K1)

Prithvi (K1)

QuincyRose (K1)

Ramen (K1)

Rapunzel97 (K1)

SamuelLPlaqson (K1)

Scarlett (K1)

SgtBeansprout (K1)

Shaobing (K1)

ShiaSurprise (K1)

Slimphazie (K1)

Spock (K1)

Stinson (K1)

Sulley (K1)

Tachez (K1)

Tiri (K1)

TreyKay (K1)

Twitch (K1)

Urkel (K1)

Validus (K1)

Veliki (K1)

YoureAdopted (K1)

Yunkel11 (K1)

Zavala (K1)

BoostSeason (K2)

DismalFunk (K2)

DismalStressor (K2)

Findley (K2)

Marcoliusprime (K2)

Milly (K2)

Mufasa (K2)

TM4 (K2)

ZoeJ (K2)

Hurricane (K3)

Keshu (K3)

MacnCheese (K3)

Pixie (K3)

ShedlockHolmes (K3)

TBond007 (K3)

Boilgate (K4)

Chancellor (K4)

Cheetobro (K4)

Eponine (K4)

Fionnbharth (K4)

JF1 (K4)

Juliette (K4)

Malthus (K4)

MissDaisy (K4)

Mitti (K4)

Patt (K4)

Reptar3000 (K4)

Ruthiejr (K4)

SamScheppers (K4)

Slarp (K4)

Taquito (K4)

Wintermute (K4)

AlleyCat (K5)

Collard (K5)

Edugator (K5)

Gengar (K5)

Guillsminger (K5)

InvictusManeo (K5)

Kratio (K5)

Larva (K5)

Leston (K5)

OkiRoe (K5)

Omnicron (K5)

Paola (K5)

Psycho (K5)

Rando14 (K5)

SoSeph (K5)

Thyatira (K5)

Waterfoul (K5)

Amgine (K6)

Amohnition (K6)

Bryler (K6)

Cain (K6)

DarthP (K6)

Ekdilam (K6)

Ellie (K6)

Fefferhead (K6)

Hammy (K6)

Krueger (K6)

Marshawn (K6)

PhelpsODU (K6)

Phrank (K6)

SirPhilip (K6)

Unicorn (K6)

Ximenita (K6)

Yuna (K6)

Aminay (K7)

Annotating InstitutionGonzaga University
Annotation StatusIn GenBank
Plaque NotesThe plaques are 3mm across, circular and clear.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

Click to View

SoSeph_1

SoSeph_2

SoSeph_3

SoSeph_5

SoSeph_6
(terminase)

SoSeph_7
(portal protein)

SoSeph_8
(MuF-like minor capsid protein)

SoSeph_9

SoSeph_10
(scaffolding protein)

SoSeph_11
(major capsid protein)

SoSeph_12
(head-to-tail adaptor)

SoSeph_13
(head-to-tail stopper)

SoSeph_14

SoSeph_15
(tail terminator)

SoSeph_16
(major tail protein)

SoSeph_17
(tail assembly chaperone)

SoSeph_18
(tail assembly chaperone)

SoSeph_19
(tape measure protein)

SoSeph_20
(minor tail protein)

SoSeph_21
(minor tail protein)

SoSeph_22

SoSeph_23
(minor tail protein)

SoSeph_24

SoSeph_25
(minor tail protein)

SoSeph_26

SoSeph_27
(minor tail protein)

SoSeph_28

SoSeph_29
(lysin A)

SoSeph_30
(lysin B)

SoSeph_31
(holin)

SoSeph_32

SoSeph_33

SoSeph_34

SoSeph_35

SoSeph_36

SoSeph_37

SoSeph_38
(serine integrase)

SoSeph_39

SoSeph_40

SoSeph_41
(immunity repressor)

SoSeph_42
(helix-turn-helix DNA binding domain protein)

SoSeph_43

SoSeph_44

SoSeph_45

SoSeph_46

SoSeph_47
(DNA polymerase III sliding clamp)

SoSeph_48

SoSeph_49

SoSeph_50

SoSeph_51

SoSeph_52

SoSeph_53
(DnaQ-like DNA polymerase III subunit)

SoSeph_54

SoSeph_55

SoSeph_56

SoSeph_57

SoSeph_58

SoSeph_59

SoSeph_60

SoSeph_61
(NrdH-like glutaredoxin)

SoSeph_62
(HNH endonuclease)

SoSeph_63
(HNH endonuclease)

SoSeph_64
(DNA primase/polymerase)

SoSeph_65
(DNA helicase)

SoSeph_66
(holliday junction resolvase)

SoSeph_67

SoSeph_68

SoSeph_69

SoSeph_70

SoSeph_71

SoSeph_72

SoSeph_73

SoSeph_74

SoSeph_75

SoSeph_76

SoSeph_77

SoSeph_78

SoSeph_79

SoSeph_80

SoSeph_81

SoSeph_82

SoSeph_83

SoSeph_84

SoSeph_85

SoSeph_86
(queuine tRNA-ribosyltransferase)

SoSeph_87

SoSeph_88
(BrnT-like toxin)

SoSeph_89
(BrnA-like antitoxin)

SoSeph_90

SoSeph_91

SoSeph_92

SoSeph_93

SoSeph_94

SoSeph_95

SoSeph_96
(HNH endonuclease)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMZ322016
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Lysate Titer 1.00x10^9
Pitt Freezer Box# 41
Pitt Freezer Box Grid# F9
Available Files
GenBank File for PhameratorDownload