Mycobacterium phage Prithvi
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Detailed Information for Phage Prithvi
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByKapil Narain
Year Found2016
Location FoundDurban, South Africa
Finding InstitutionUniversity of Kwazulu-Natal
ProgramMycobacterial Genetics Course, Durban, South Africa
From enriched soil sample?Unknown
Isolation TemperatureNot entered
GPS Coordinates29.8675 S, 30.9808 E Map
Discovery NotesPrithvi was discovered at the University of Kwa-Zulu Natal (Westville campus). It was on my journey to the lab for the first day of the KRITH SANTHE Mycobacterial and Genetics course that I noticed a minor embankment on campus. Equipped with an old teaspoon and a plastic zipper bag, I eagerly dug into the semi-moist Cayote brown earth about 5 - 10 cm and gathered the sample - unbeknownst to me that history was being made.
Naming NotesPrithvi is the Sanskrit word for Earth and as such, I found it most appropriate. It is also the name of a Devi (Goddess) in Hinduism and Buddhism.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedMay 17, 2017
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina
Approximate Shotgun Coverage2430
Genome length (bp)60311
Character of genome ends3' Sticky Overhang
Overhang Length11 bases
Overhang SequenceCTCGTAGGCAT
GC Content66.8%
Fasta file available?Yes: Download fasta file
Characterization
ClusterK
SubclusterK1
Cluster Life CycleTemperate
Other Cluster Members

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ActinUp (K1)

Adephagia (K1)

Adonis (K1)

Ageofdapage (K1)

AlishaPH (K1)

Amelie (K1)

Anaya (K1)

Angelica (K1)

Apocalypse (K1)

Asayake (K1)

Atiba (K1)

BaghaKamala (K1)

BarrelRoll (K1)

BEEST (K1)

Beezoo (K1)

Bella96 (K1)

Belladonna (K1)

BGlluviae (K1)

Biglebops (K1)

Blizzard (K1)

Boiiii (K1)

Capricorn (K1)

CaseJules (K1)

CheetoDust (K1)

Chris (K1)

CREW (K1)

CrimD (K1)

Curiosium (K1)

Dalmuri (K1)

Dartin (K1)

Deby (K1)

Devera (K1)

Dole (K1)

DrHayes (K1)

Durfee (K1)

Efra2 (K1)

Emerson (K1)

Enkosi (K1)

Ganymede (K1)

Geraldini (K1)

Guanica15 (K1)

HedwigODU (K1)

Homura (K1)

Hyperbowlee (K1)

Illumine (K1)

Inky (K1)

Jarvi (K1)

JAWS (K1)

Jayhawk (K1)

Jeckyll (K1)

Joy99 (K1)

KiSi (K1)

LastHope (K1)

LaterM (K1)

LeMond (K1)

LilPharaoh (K1)

LindNT (K1)

Llorens (K1)

Lunahalos (K1)

MarkPhew (K1)

McMater (K1)

Mdavu (K1)

MeaningOfLife (K1)

Megsy (K1)

Murucutumbu (K1)

Mynx (K1)

Nibb (K1)

Nikao (K1)

Niklas (K1)

Nutello (K1)

Oscar (K1)

Padfoot (K1)

Padpat (K1)

Peanam (K1)

Peel (K1)

Piatt (K1)

Pokerus (K1)

Prithvi (K1)

QuincyRose (K1)

Ramen (K1)

Rapunzel97 (K1)

Richo (K1)

Rosmarinus (K1)

SamuelLPlaqson (K1)

Scarlett (K1)

SgtBeansprout (K1)

Shaobing (K1)

ShiaSurprise (K1)

Slimphazie (K1)

Spock (K1)

Stinson (K1)

Sulley (K1)

Tachez (K1)

TaiwanKao (K1)

TingHuaYa (K1)

TiniBug (K1)

Tiri (K1)

Topper (K1)

Torres (K1)

TreyKay (K1)

TruffulaTree (K1)

Twitch (K1)

Urkel (K1)

Validus (K1)

Veliki (K1)

YoureAdopted (K1)

Yunkel11 (K1)

Zabiza (K1)

Zavala (K1)

BoostSeason (K2)

DismalFunk (K2)

DismalStressor (K2)

Findley (K2)

Marcoliusprime (K2)

Milly (K2)

Mufasa (K2)

Strobilo (K2)

TM4 (K2)

ZoeJ (K2)

Hurricane (K3)

Keshu (K3)

MacnCheese (K3)

Pharb (K3)

Pixie (K3)

ShedlockHolmes (K3)

TBond007 (K3)

TribleTrouble (K3)

Chancellor (K4)

Cheetobro (K4)

Eponine (K4)

Fionnbharth (K4)

JF1 (K4)

Juliette (K4)

Kraw (K4)

Malthus (K4)

MissDaisy (K4)

Mitti (K4)

OmniCritical (K4)

Patt (K4)

Reptar3000 (K4)

Ruthiejr (K4)

SamScheppers (K4)

Slarp (K4)

Taquito (K4)

Wintermute (K4)

Agent47 (K5)

AlleyCat (K5)

Collard (K5)

Dadosky (K5)

Edugator (K5)

Feyre (K5)

Gengar (K5)

Guillsminger (K5)

Heftyboy (K5)

InvictusManeo (K5)

Kratio (K5)

Larva (K5)

Leston (K5)

Miryou (K5)

OkiRoe (K5)

Omnicron (K5)

Paola (K5)

Psycho (K5)

Rando14 (K5)

SoSeph (K5)

Thyatira (K5)

Waterfoul (K5)

Amgine (K6)

Amohnition (K6)

Bryler (K6)

Cain (K6)

DarthP (K6)

Ekdilam (K6)

Ellie (K6)

Fefferhead (K6)

Hammy (K6)

Krueger (K6)

Marshawn (K6)

PhelpsODU (K6)

Phrank (K6)

Shadow1 (K6)

SirPhilip (K6)

Sunflower1121 (K6)

Syra333 (K6)

TClif (K6)

Tierra (K6)

Unicorn (K6)

Ximenita (K6)

Yuna (K6)

Aminay (K7)

Boilgate (K8)

Annotating InstitutionUniversity of Kwazulu-Natal
Annotation StatusIn GenBank
MorphotypeSiphoviridae
Number of Genes97
Number of tRNAs1
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

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Prithvi_1

Prithvi_2

Prithvi_3

Prithvi_4

Prithvi_5 — tRNA
(tRNA-Trp(cca))

Prithvi_6

Prithvi_7

Prithvi_8
(terminase)

Prithvi_9
(portal protein)

Prithvi_10
(MuF-like minor capsid protein)

Prithvi_11

Prithvi_12
(scaffolding protein)

Prithvi_13
(major capsid protein)

Prithvi_14
(head-to-tail adaptor)

Prithvi_15
(head-to-tail stopper)

Prithvi_16

Prithvi_17
(tail terminator)

Prithvi_18

Prithvi_19

Prithvi_20

Prithvi_21
(tape measure protein)

Prithvi_22
(minor tail protein)

Prithvi_23
(minor tail protein)

Prithvi_24
(minor tail protein)

Prithvi_25
(minor tail protein)

Prithvi_26
(minor tail protein)

Prithvi_27
(minor tail protein)

Prithvi_28
(minor tail protein)

Prithvi_29

Prithvi_30
(lysin A)

Prithvi_31
(lysin B)

Prithvi_32
(holin)

Prithvi_33

Prithvi_34

Prithvi_35
(MRE11 double-strand break endo/exonuclease)

Prithvi_36

Prithvi_37

Prithvi_38

Prithvi_39
(queuine tRNA-ribosyltransferase)

Prithvi_40

Prithvi_41

Prithvi_42
(tyrosine integrase)

Prithvi_43

Prithvi_44
(immunity repressor)

Prithvi_45

Prithvi_46
(excise)

Prithvi_47

Prithvi_48

Prithvi_49

Prithvi_50
(helix-turn-helix DNA binding protein)

Prithvi_51
(WhiB family transcription factor)

Prithvi_52

Prithvi_53

Prithvi_54

Prithvi_55

Prithvi_56

Prithvi_57

Prithvi_58
(DnaE-like DNA polymerase III)

Prithvi_59

Prithvi_60

Prithvi_61

Prithvi_62

Prithvi_63

Prithvi_64

Prithvi_65

Prithvi_66

Prithvi_67

Prithvi_68

Prithvi_69
(HNH endonuclease)

Prithvi_70
(DNA primase/helicase)

Prithvi_71

Prithvi_72

Prithvi_73
(RusA-like resolvase)

Prithvi_74

Prithvi_75

Prithvi_76

Prithvi_77

Prithvi_78

Prithvi_79
(SprT-like protease)

Prithvi_80

Prithvi_81

Prithvi_82

Prithvi_83

Prithvi_84

Prithvi_85

Prithvi_86

Prithvi_87
(RtcB-like RNA ligase)

Prithvi_88

Prithvi_89

Prithvi_90

Prithvi_91

Prithvi_92

Prithvi_93

Prithvi_94

Prithvi_95

Prithvi_96

Prithvi_97

Prithvi_98
(HNH endonuclease)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMK016503
Refseq NumberNone yet
Archiving Info
Archiving status Not in Pitt Archives
Available Files
Plaque PictureDownload
EM PictureDownload
Final DNAMaster FileDownload
GenBank File for PhameratorDownload