Mycobacterium phage Prithvi
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Detailed Information for Phage Prithvi
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByKapil Narain
Year Found2016
Location FoundDurban, South Africa
Finding InstitutionUniversity of Kwazulu-Natal
ProgramMycobacterial Genetics Course, Durban, South Africa
From enriched soil sample?Unknown
Isolation TemperatureNot entered
GPS Coordinates29.8675 S, 30.9808 E Map
Discovery NotesPrithvi was discovered at the University of Kwa-Zulu Natal (Westville campus). It was on my journey to the lab for the first day of the KRITH SANTHE Mycobacterial and Genetics course that I noticed a minor embankment on campus. Equipped with an old teaspoon and a plastic zipper bag, I eagerly dug into the semi-moist Cayote brown earth about 5 - 10 cm and gathered the sample - unbeknownst to me that history was being made.
Naming NotesPrithvi is the Sanskrit word for Earth and as such, I found it most appropriate. It is also the name of a Devi (Goddess) in Hinduism and Buddhism.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedMay 17, 2017
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage2430
Genome length (bp)60311
Character of genome ends3' Sticky Overhang
Overhang Length11 bases
Overhang SequenceCTCGTAGGCAT
GC Content66.8%
Fasta file available?Yes: Download fasta file
Characterization
ClusterK
SubclusterK1
Cluster Life CycleTemperate
Other Cluster Members

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Aella (None)

AllaKazam (None)

Aloysius (None)

Andy (None)

Asayake (None)

Aspen (None)

Auroraborealis (None)

BackInNotBlack (None)

BaenaC (None)

Bailcon (None)

BasselJr (None)

Boogaloo (None)

Boyz (None)

Calcy (None)

Caroline (None)

Caspian (None)

Chat (None)

Cirrostratus (None)

Clarence (None)

Cookland (None)

Cortana (None)

Cunlay (None)

Dcuz (None)

Denara (None)

Dor110 (None)

DoubleSloth (None)

Dougal (None)

DrThomas (None)

DubyaDubya (None)

ElegantBeing (None)

Erinyes (None)

Fisch (None)

FitzSpotz (None)

GoBuffs (None)

GUsh (None)

GUsthebus (None)

Isa16 (None)

Jallie (None)

Jamanda (None)

Jameskc (None)

Kennel (None)

KevinPhangos (None)

LaFlor (None)

LanaDelPhay (None)

Lancelot (None)

LilPhil (None)

LuckyWorm (None)

MacArthur (None)

Machine (None)

MaeVan (None)

ManBun (None)

Marilu (None)

Marvolo (None)

McSparkle (None)

Meow (None)

Mileyphyrus (None)

Misa (None)

Mochi (None)

Nestitis (None)

NimNO (None)

Noonan (None)

Pablo (None)

PeachyKay (None)

Pegasicorn (None)

Phaedra (None)

Phaguccine (None)

Phlynn (None)

Pita107 (None)

Plaqccine (None)

Pluto15 (None)

Poochlock (None)

PresidentPhayn (None)

PresThayne (None)

PuddlePaige (None)

Reina (None)

Rivierearbre (None)

Sabotage (None)

Smore (None)

Speckles360 (None)

SpeedyClaxton (None)

Spots16 (None)

Stoya (None)

SuJos8 (None)

SwaggyP (None)

Syra333 (None)

Thayne (None)

Tomothy (None)

TrippyB (None)

TRossi (None)

Uilani (None)

Winton (None)

Wivia (None)

Yachna (None)

Yianni (None)

Zag19 (None)

Zagup (None)

Zhage (None)

ActinUp (K1)

Adephagia (K1)

Adonis (K1)

AlishaPH (K1)

Amelie (K1)

Anaya (K1)

Angelica (K1)

Apocalypse (K1)

Atiba (K1)

BarrelRoll (K1)

Bash (K1)

BEEST (K1)

Beezoo (K1)

Bella96 (K1)

Belladonna (K1)

Biglebops (K1)

Blessed (K1)

BlueSky (K1)

Capricorn (K1)

Chris (K1)

Christoria (K1)

CREW (K1)

CrimD (K1)

Curiosium (K1)

Dalmuri (K1)

Deby (K1)

DrHayes (K1)

Efra2 (K1)

Emerson (K1)

Enkosi (K1)

Erdnod (K1)

Flash (K1)

Gansey (K1)

Geraldini (K1)

Guanica15 (K1)

Guimauve (K1)

HedwigODU (K1)

Homura (K1)

JAWS (K1)

Jeckyll (K1)

Jerome (K1)

Jersey (K1)

Jophie (K1)

Joy99 (K1)

KiSi (K1)

LastHope (K1)

LaterM (K1)

Lefty (K1)

Lela18 (K1)

LeMond (K1)

LeslieK (K1)

LilPharaoh (K1)

LindNT (K1)

MarkPhew (K1)

Mendoza (K1)

MicroMini (K1)

MLouK (K1)

Mozingo (K1)

Murucutumbu (K1)

Mynx (K1)

Nibb (K1)

Niklas (K1)

Oscar (K1)

Peanam (K1)

PhindingNemo (K1)

Phineas3776 (K1)

Pompey (K1)

Prithvi (K1)

Ramen (K1)

Rapunzel97 (K1)

Rozay (K1)

SamuelLPlaqson (K1)

Sarang (K1)

Scarlett (K1)

Schmutz (K1)

SgtBeansprout (K1)

Shaobing (K1)

Slimphazie (K1)

Smurfee (K1)

Sulley (K1)

Tachez (K1)

TinkerBelle (K1)

TreyKay (K1)

Urkel (K1)

Validus (K1)

Veliki (K1)

Vidiian (K1)

Wilota (K1)

YoureAdopted (K1)

Yunkel11 (K1)

Zavala (K1)

BontFonne (K2)

BoostSeason (K2)

Cygnus24 (K2)

DismalFunk (K2)

DismalStressor (K2)

Findley (K2)

Hyperbowlee (K2)

Marcoliusprime (K2)

Milly (K2)

Mufasa (K2)

Persephone (K2)

TM4 (K2)

Uncooperative (K2)

Zigg (K2)

ZoeJ (K2)

Hurricane (K3)

Keshu (K3)

MacnCheese (K3)

Pixie (K3)

RonKinser (K3)

ShedlockHolmes (K3)

TBond007 (K3)

Chancellor (K4)

Cheetobro (K4)

Fionnbharth (K4)

MissDaisy (K4)

Mitti (K4)

Patt (K4)

Reptar3000 (K4)

SamScheppers (K4)

Slarp (K4)

Taquito (K4)

Wintermute (K4)

AlleyCat (K5)

Collard (K5)

Edugator (K5)

Gengar (K5)

Guillsminger (K5)

Kratio (K5)

Larva (K5)

Leston (K5)

NemNuong (K5)

OkiRoe (K5)

Omnicron (K5)

Paola (K5)

Rando14 (K5)

Thyatira (K5)

Waterfoul (K5)

Amgine (K6)

Amohnition (K6)

Bryler (K6)

Cain (K6)

DarthP (K6)

Ekdilam (K6)

Euphorie (K6)

Hammy (K6)

Krueger (K6)

Lazy (K6)

Marshawn (K6)

PhelpsODU (K6)

Phrank (K6)

SirPhilip (K6)

Unicorn (K6)

Ximenita (K6)

Yuna (K6)

Aminay (K7)

Annotation StatusIn GenBank
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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Prithvi_1

Prithvi_2

Prithvi_3

Prithvi_4

Prithvi_6

Prithvi_7

Prithvi_8
(terminase)

Prithvi_9
(portal)

Prithvi_10
(capsid maturation protein)

Prithvi_11

Prithvi_12
(scaffolding protein)

Prithvi_13
(major capsid)

Prithvi_14
(head-to-tail adaptor)

Prithvi_15
(head-to-tail stopper)

Prithvi_16

Prithvi_17
(tail terminator)

Prithvi_18
(major tail)

Prithvi_19
(tail assembly chaperone)

Prithvi_20
(tail assembly chaperone)

Prithvi_21
(tapemeasure)

Prithvi_22
(minor tail)

Prithvi_23
(minor tail)

Prithvi_24
(minor tail)

Prithvi_25
(minor tail)

Prithvi_26
(minor tail)

Prithvi_27
(minor tail)

Prithvi_28
(minor tail)

Prithvi_29

Prithvi_30
(lysin A)

Prithvi_31
(lysin B)

Prithvi_32
(holin)

Prithvi_33

Prithvi_34

Prithvi_35
(exonuclease)

Prithvi_36

Prithvi_37

Prithvi_38

Prithvi_39
(queuine tRNA-ribosyltransferase)

Prithvi_40

Prithvi_41

Prithvi_42
(integrase, Y-Int)

Prithvi_43
(membrane protein)

Prithvi_44
(immunity repressor)

Prithvi_45

Prithvi_46
(helix-turn-helix DNA binding)

Prithvi_47

Prithvi_48

Prithvi_49

Prithvi_50
(helix-turn-helix DNa binding)

Prithvi_51
(WhiB family transcription factor)

Prithvi_52

Prithvi_53

Prithvi_54

Prithvi_55

Prithvi_56

Prithvi_57

Prithvi_58
(DnaQ exonuclease)

Prithvi_59

Prithvi_60

Prithvi_61

Prithvi_62

Prithvi_63

Prithvi_64

Prithvi_65

Prithvi_66

Prithvi_67

Prithvi_68

Prithvi_69
(HNH endonuclease)

Prithvi_70
(DNA primase/polymerase)

Prithvi_71

Prithvi_72

Prithvi_73
(RusA resolvase)

Prithvi_74

Prithvi_75

Prithvi_76
(helix-turn-helix domain)

Prithvi_77

Prithvi_78

Prithvi_79
(SprT protease)

Prithvi_80

Prithvi_81

Prithvi_82

Prithvi_83

Prithvi_84

Prithvi_85

Prithvi_86

Prithvi_87
(rtcB RNA ligase)

Prithvi_88

Prithvi_89

Prithvi_90

Prithvi_91

Prithvi_92

Prithvi_93

Prithvi_94

Prithvi_95

Prithvi_96

Prithvi_97

Prithvi_98
(HNH endonuclease)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMK016503
Refseq NumberNone yet
Archiving Info
Archiving status Not in Pitt Archives
Available Files
Plaque PictureDownload
EM PictureDownload
Final DNAMaster FileDownload
GenBank File for PhameratorDownload