Mycobacterium phage Ellie
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Detailed Information for Phage Ellie
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByBrenden Merriman
Year Found2013
Location FoundGrand Haven, MI USA
Finding InstitutionHope College
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Unknown
Isolation TemperatureNot entered
GPS Coordinates43.013067 N, 86.1648 W Map
Discovery NotesSoil was taken from a garden on 9/11/13 at 6:20 p.m.. The air temp was 77 degrees F, and the soil was retrieved from a moist bed, at a depth of 3 cm. A rosebush and hydrangea were nearby, and there was little foot traffic to the area.
Naming NotesThe name is of my Aunt born with severe cerebral palsy with cognitive impairment and epilepsy, who passed away several years ago. The garden from which the soil sample was retrieved was named after her, and thus, the phage is named after her too.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedMay 6, 2020
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage241
Genome length (bp)61945
Character of genome ends3' Sticky Overhang
Overhang Length11 bases
Overhang SequenceCTCGTAGGCAT
GC Content67.0%
Fasta file available?Yes: Download fasta file
Characterization
ClusterK
SubclusterK6
Cluster Life CycleTemperate
Other Cluster Members

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ActinUp (K1)

Adephagia (K1)

Adonis (K1)

AlishaPH (K1)

Amelie (K1)

Anaya (K1)

Angelica (K1)

Apocalypse (K1)

Asayake (K1)

Atiba (K1)

BaghaKamala (K1)

BarrelRoll (K1)

BEEST (K1)

Beezoo (K1)

Bella96 (K1)

Belladonna (K1)

BGlluviae (K1)

Biglebops (K1)

Blizzard (K1)

Boiiii (K1)

Capricorn (K1)

CaseJules (K1)

Chris (K1)

CREW (K1)

CrimD (K1)

Curiosium (K1)

Dalmuri (K1)

Deby (K1)

Devera (K1)

Dole (K1)

DrHayes (K1)

Durfee (K1)

Efra2 (K1)

Emerson (K1)

Enkosi (K1)

Ganymede (K1)

Geraldini (K1)

Guanica15 (K1)

HedwigODU (K1)

Homura (K1)

Hyperbowlee (K1)

Illumine (K1)

Inky (K1)

Jarvi (K1)

JAWS (K1)

Jeckyll (K1)

Joy99 (K1)

KiSi (K1)

LastHope (K1)

LaterM (K1)

LeMond (K1)

LilPharaoh (K1)

LindNT (K1)

MarkPhew (K1)

Mdavu (K1)

MeaningOfLife (K1)

Murucutumbu (K1)

Mynx (K1)

Nibb (K1)

Niklas (K1)

Nutello (K1)

Oscar (K1)

Padfoot (K1)

Padpat (K1)

Peanam (K1)

Peel (K1)

Piatt (K1)

Pokerus (K1)

Prithvi (K1)

QuincyRose (K1)

Ramen (K1)

Rapunzel97 (K1)

SamuelLPlaqson (K1)

Scarlett (K1)

SgtBeansprout (K1)

Shaobing (K1)

ShiaSurprise (K1)

Slimphazie (K1)

Spock (K1)

Stinson (K1)

Sulley (K1)

Tachez (K1)

TreyKay (K1)

Twitch (K1)

Urkel (K1)

Validus (K1)

Veliki (K1)

YoureAdopted (K1)

Yunkel11 (K1)

Zavala (K1)

BoostSeason (K2)

DismalFunk (K2)

DismalStressor (K2)

Findley (K2)

Marcoliusprime (K2)

Milly (K2)

Mufasa (K2)

TM4 (K2)

ZoeJ (K2)

Hurricane (K3)

Keshu (K3)

MacnCheese (K3)

Pixie (K3)

ShedlockHolmes (K3)

TBond007 (K3)

Boilgate (K4)

Chancellor (K4)

Cheetobro (K4)

Eponine (K4)

Fionnbharth (K4)

JF1 (K4)

Juliette (K4)

Malthus (K4)

MissDaisy (K4)

Mitti (K4)

Patt (K4)

Reptar3000 (K4)

Ruthiejr (K4)

SamScheppers (K4)

Slarp (K4)

Taquito (K4)

Wintermute (K4)

AlleyCat (K5)

Collard (K5)

Edugator (K5)

Gengar (K5)

Guillsminger (K5)

InvictusManeo (K5)

Kratio (K5)

Larva (K5)

Leston (K5)

OkiRoe (K5)

Omnicron (K5)

Paola (K5)

Psycho (K5)

Rando14 (K5)

Thyatira (K5)

Waterfoul (K5)

Amgine (K6)

Amohnition (K6)

Bryler (K6)

Cain (K6)

DarthP (K6)

Ekdilam (K6)

Ellie (K6)

Fefferhead (K6)

Hammy (K6)

Krueger (K6)

Marshawn (K6)

PhelpsODU (K6)

Phrank (K6)

SirPhilip (K6)

Unicorn (K6)

Ximenita (K6)

Yuna (K6)

Aminay (K7)

Annotating InstitutionUniversity of Pittsburgh
Annotation StatusQC Complete
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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Ellie_1

Ellie_2

Ellie_3

Ellie_4

Ellie_5
(terminase)

Ellie_6
(portal protein)

Ellie_7
(MuF-like minor capsid protein)

Ellie_8

Ellie_9
(scaffolding protein)

Ellie_10
(major capsid protein)

Ellie_11
(head-to-tail adaptor)

Ellie_12
(head-to-tail stopper)

Ellie_13

Ellie_14
(tail terminator)

Ellie_15
(major tail protein)

Ellie_16
(tail assembly chaperone)

Ellie_17
(tail assembly chaperone)

Ellie_18
(tape measure protein)

Ellie_19
(minor tail protein)

Ellie_20
(minor tail protein)

Ellie_21

Ellie_22
(minor tail protein)

Ellie_23

Ellie_24
(minor tail protein)

Ellie_25
(minor tail protein)

Ellie_26

Ellie_27
(lysin A)

Ellie_28
(lysin B)

Ellie_29
(holin)

Ellie_30

Ellie_31

Ellie_32
(exonuclease)

Ellie_33

Ellie_34
(helix-turn-helix DNA binding protein)

Ellie_35

Ellie_36

Ellie_37
(queuine tRNA-ribosyltransferase)

Ellie_38

Ellie_39
(tyrosine integrase)

Ellie_40

Ellie_41
(immunity repressor)

Ellie_42
(Cro (control of repressor's operator))

Ellie_43
(excise)

Ellie_44

Ellie_45

Ellie_46

Ellie_47

Ellie_48
(helix-turn-helix DNA binding protein)

Ellie_49
(WhiB family transcription factor)

Ellie_50

Ellie_51

Ellie_52

Ellie_53

Ellie_54
(DNA polymerase III exonuclease (epsilon))

Ellie_55

Ellie_56
(Cas4 family exonuclease)

Ellie_57

Ellie_58

Ellie_59

Ellie_60

Ellie_61

Ellie_62
(NrdH-like glutaredoxin)

Ellie_63
(HNH endonuclease)

Ellie_64

Ellie_65
(DNA primase/polymerase)

Ellie_66

Ellie_67
(RusA-like resolvase (endonuclease))

Ellie_68

Ellie_69
(DNA binding protein)

Ellie_70

Ellie_71

Ellie_72

Ellie_73
(helix-turn-helix DNA binding protein)

Ellie_74
(DNA binding protein)

Ellie_75

Ellie_76

Ellie_77
(helix-turn-helix DNA binding protein)

Ellie_78

Ellie_79
(helix-turn-helix DNA binding protein)

Ellie_80

Ellie_81

Ellie_82

Ellie_83

Ellie_84
(RtcB-like RNA ligase)

Ellie_85

Ellie_86

Ellie_87

Ellie_88

Ellie_89

Ellie_90

Ellie_91

Ellie_92

Ellie_93
(DNA binding protein)

Ellie_94

Ellie_95

Ellie_96
(HNH endonuclease)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?No
GenBank AccessionNone yet
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Lysate Titer 5.1x10^9
Pitt Freezer Box# 5
Pitt Freezer Box Grid# A8
Available Files
Plaque PictureDownload
GenBank File for PhameratorDownload