Mycobacterium phage Capricorn
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Detailed Information for Phage Capricorn
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Former namesB'1B3P
Found ByAmanda Staples
Year Found2014
Location FoundUpton, KY United States
Finding InstitutionWestern Kentucky University
ProgramKentucky Biomedical Infrastructure Network Small Genomes Discovery Program
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates37.482447 N, 85.905523 W Map
Discovery NotesSoil sample was collected beside the swing set in my front yard. A very rural area surrounded by cow farms. The soil was above a concrete encased 4x4 post that is continuously agitated by spades digging for worms. The color was light brown with little moisture (red clay predominates the area mostly).
Naming NotesThe Capricorn is the Zodiac sign of my oldest son. He's very sweet and sometimes seems so elusive. Just like him, only in the right light was this plaque visible.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedSep 18, 2015
Sequencing FacilityNC State Genomic Sciences Laboratory
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage12697
Genome length (bp)59708
Character of genome ends3' Sticky Overhang
Overhang Length11 bases
Overhang SequenceCTCGTAGGCAT
GC Content66.5%
Fasta file available?Yes: Download fasta file
Characterization
ClusterK
SubclusterK1
Cluster Life CycleTemperate
Other Cluster Members

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Aella (None)

AllaKazam (None)

Aloysius (None)

Andy (None)

Asayake (None)

Aspen (None)

Auroraborealis (None)

BackInNotBlack (None)

BaenaC (None)

Bailcon (None)

BasselJr (None)

Boogaloo (None)

Boyz (None)

Calcy (None)

Caroline (None)

Caspian (None)

Chat (None)

Cirrostratus (None)

Clarence (None)

Cookland (None)

Cortana (None)

Cunlay (None)

Dcuz (None)

Denara (None)

Dor110 (None)

DoubleSloth (None)

Dougal (None)

DrThomas (None)

DubyaDubya (None)

ElegantBeing (None)

Erinyes (None)

Fisch (None)

FitzSpotz (None)

GoBuffs (None)

GUsh (None)

GUsthebus (None)

Isa16 (None)

Jallie (None)

Jamanda (None)

Jameskc (None)

Kennel (None)

KevinPhangos (None)

LaFlor (None)

LanaDelPhay (None)

Lancelot (None)

LilPhil (None)

LuckyWorm (None)

MacArthur (None)

Machine (None)

MaeVan (None)

ManBun (None)

Marilu (None)

Marvolo (None)

McSparkle (None)

Meow (None)

Mileyphyrus (None)

Misa (None)

Mochi (None)

Nestitis (None)

NimNO (None)

Noonan (None)

Pablo (None)

PeachyKay (None)

Pegasicorn (None)

Phaedra (None)

Phaguccine (None)

Phlynn (None)

Pita107 (None)

Plaqccine (None)

Pluto15 (None)

Poochlock (None)

PresidentPhayn (None)

PresThayne (None)

PuddlePaige (None)

Reina (None)

Rivierearbre (None)

Sabotage (None)

Smore (None)

Speckles360 (None)

SpeedyClaxton (None)

Spots16 (None)

Stoya (None)

SuJos8 (None)

SwaggyP (None)

Syra333 (None)

Thayne (None)

Tomothy (None)

TrippyB (None)

TRossi (None)

Uilani (None)

Winton (None)

Wivia (None)

Yachna (None)

Yianni (None)

Zag19 (None)

Zagup (None)

Zhage (None)

ActinUp (K1)

Adephagia (K1)

Adonis (K1)

AlishaPH (K1)

Amelie (K1)

Anaya (K1)

Angelica (K1)

Apocalypse (K1)

Atiba (K1)

BarrelRoll (K1)

Bash (K1)

BEEST (K1)

Beezoo (K1)

Bella96 (K1)

Belladonna (K1)

Biglebops (K1)

Blessed (K1)

BlueSky (K1)

Capricorn (K1)

Chris (K1)

Christoria (K1)

CREW (K1)

CrimD (K1)

Curiosium (K1)

Dalmuri (K1)

Deby (K1)

DrHayes (K1)

Efra2 (K1)

Emerson (K1)

Enkosi (K1)

Erdnod (K1)

Flash (K1)

Gansey (K1)

Geraldini (K1)

Guanica15 (K1)

Guimauve (K1)

HedwigODU (K1)

Homura (K1)

JAWS (K1)

Jeckyll (K1)

Jerome (K1)

Jersey (K1)

Jophie (K1)

Joy99 (K1)

KiSi (K1)

LastHope (K1)

LaterM (K1)

Lefty (K1)

Lela18 (K1)

LeMond (K1)

LeslieK (K1)

LilPharaoh (K1)

LindNT (K1)

MarkPhew (K1)

Mendoza (K1)

MicroMini (K1)

MLouK (K1)

Mozingo (K1)

Murucutumbu (K1)

Mynx (K1)

Nibb (K1)

Niklas (K1)

Oscar (K1)

Peanam (K1)

PhindingNemo (K1)

Phineas3776 (K1)

Pompey (K1)

Prithvi (K1)

Ramen (K1)

Rapunzel97 (K1)

Rozay (K1)

SamuelLPlaqson (K1)

Sarang (K1)

Scarlett (K1)

Schmutz (K1)

SgtBeansprout (K1)

Shaobing (K1)

Slimphazie (K1)

Smurfee (K1)

Sulley (K1)

Tachez (K1)

TinkerBelle (K1)

TreyKay (K1)

Urkel (K1)

Validus (K1)

Veliki (K1)

Vidiian (K1)

Wilota (K1)

YoureAdopted (K1)

Yunkel11 (K1)

Zavala (K1)

BontFonne (K2)

BoostSeason (K2)

Cygnus24 (K2)

DismalFunk (K2)

DismalStressor (K2)

Findley (K2)

Hyperbowlee (K2)

Marcoliusprime (K2)

Milly (K2)

Mufasa (K2)

Persephone (K2)

TM4 (K2)

Uncooperative (K2)

Zigg (K2)

ZoeJ (K2)

Hurricane (K3)

Keshu (K3)

MacnCheese (K3)

Pixie (K3)

RonKinser (K3)

ShedlockHolmes (K3)

TBond007 (K3)

Chancellor (K4)

Cheetobro (K4)

Fionnbharth (K4)

MissDaisy (K4)

Mitti (K4)

Patt (K4)

Reptar3000 (K4)

SamScheppers (K4)

Slarp (K4)

Taquito (K4)

Wintermute (K4)

AlleyCat (K5)

Collard (K5)

Edugator (K5)

Gengar (K5)

Guillsminger (K5)

Kratio (K5)

Larva (K5)

Leston (K5)

NemNuong (K5)

OkiRoe (K5)

Omnicron (K5)

Paola (K5)

Rando14 (K5)

Thyatira (K5)

Waterfoul (K5)

Amgine (K6)

Amohnition (K6)

Bryler (K6)

Cain (K6)

DarthP (K6)

Ekdilam (K6)

Euphorie (K6)

Hammy (K6)

Krueger (K6)

Lazy (K6)

Marshawn (K6)

PhelpsODU (K6)

Phrank (K6)

SirPhilip (K6)

Unicorn (K6)

Ximenita (K6)

Yuna (K6)

Aminay (K7)

Annotation StatusIn GenBank
Plaque NotesSmall, very turbid plaques, clustered pretty close together.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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Capricorn_1

Capricorn_2

Capricorn_3

Capricorn_4

Capricorn_6

Capricorn_7
(terminase, small subunit)

Capricorn_8
(terminase, large subunit)

Capricorn_9
(portal protein)

Capricorn_10
(capsid maturation protease)

Capricorn_11

Capricorn_12
(scaffolding protein)

Capricorn_13
(major capsid protein)

Capricorn_14
(head-to-tail connector complex protein)

Capricorn_15
(head-to-tail connector complex protein)

Capricorn_16
(head-to-tail connector complex protein)

Capricorn_17
(head-to-tail connector complex protein)

Capricorn_18
(major tail protein)

Capricorn_19
(tail assembly chaperone)

Capricorn_20
(tail assembly chaperone)

Capricorn_21
(tape measure protein)

Capricorn_22
(minor tail protein)

Capricorn_23
(minor tail protein)

Capricorn_24
(minor tail protein)

Capricorn_25
(minor tail protein)

Capricorn_26
(minor tail protein)

Capricorn_27
(minor tail protein)

Capricorn_28
(minor tail protein)

Capricorn_29

Capricorn_30
(lysin A)

Capricorn_31
(lysin B)

Capricorn_32
(holin)

Capricorn_33
(membrane protein)

Capricorn_34

Capricorn_35
(MRE11 double-strand break endo/exonuclease)

Capricorn_36
(helix-turn-helix DNA binding domain)

Capricorn_37

Capricorn_38

Capricorn_39

Capricorn_40
(nkf)

Capricorn_41
(integrase, (Y-int))

Capricorn_42
(membrane protein)

Capricorn_43
(immunity repressor)

Capricorn_44
(Cro (control of repressor`s operator))

Capricorn_45
(excise)

Capricorn_46

Capricorn_47
(membrane protein)

Capricorn_48

Capricorn_49
(helix-turn-helix DNA binding domain)

Capricorn_50
(WhiB family transcription factor)

Capricorn_51

Capricorn_52

Capricorn_53

Capricorn_54

Capricorn_55

Capricorn_56

Capricorn_57
(DnaQ-like exonuclease (DNA polymerase III subunit))

Capricorn_58

Capricorn_59

Capricorn_60

Capricorn_61
(exonuclease)

Capricorn_62

Capricorn_63

Capricorn_64

Capricorn_65

Capricorn_66
(NrdH-like glutaredoxin)

Capricorn_67
(membrane protein)

Capricorn_68
(HNH endonuclease)

Capricorn_69
(DNA primase)

Capricorn_70

Capricorn_71
(RusA-like resolvase (endonuclease))

Capricorn_72

Capricorn_73
(helix-turn-helix DNA binding domain)

Capricorn_74

Capricorn_75

Capricorn_76
(SprT-like protease)

Capricorn_77

Capricorn_78

Capricorn_79
(membrane protein)

Capricorn_80

Capricorn_81

Capricorn_82

Capricorn_83

Capricorn_84

Capricorn_85
(RNA ligase)

Capricorn_86

Capricorn_87

Capricorn_88

Capricorn_89

Capricorn_90

Capricorn_91
(antitoxin in toxin/antitoxin system, HicB-like)

Capricorn_92
(toxin in toxin/antitoxin system, HicA-like)

Capricorn_93

Capricorn_94

Capricorn_95

Capricorn_96

Capricorn_97
(HNH endonuclease)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMK112537
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Lysate Titer 5.1x10^9
Date of SEA Lysate Titering Dec 3, 2014
Pitt Freezer Box# 52
Pitt Freezer Box Grid# C8
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload