Detailed Information for Phage LindNT |
Discovery Information |
Isolation Host | Mycobacterium smegmatis mc²155 |
Found By | Ntombizodwa Maduna |
Year Found | 2015 |
Location Found | Pietermaritzburg, South Africa |
Finding Institution | University of Kwazulu-Natal |
Program | Mycobacterial Genetics Course, Durban, South Africa |
From enriched soil sample? | No |
Isolation Temperature | Not entered |
GPS Coordinates | 29.63376 S, 30.41095 E Map |
Discovery Notes | The soil was obtained from a small scale vegetable garden which is tilled and watered everyday but not nourished. Garden is not more than 3 months old with red-brown clay loam soil. |
Naming Notes | "Lind" my mother"s name Lindiwe whom i love so much, has been there for me since day 1 and all her efforts are as a results of where i am now. I want her to take credit for my first discovery."NT" from my first name Ntombizodwa. Because i am a big fan of chocolate the name is pronounced as just "lindt" |
Sequencing Information |
Sequencing Complete? | Yes |
Date Sequencing Completed | Mar 7, 2016 |
Sequencing Facility | Pittsburgh Bacteriophage Institute |
Shotgun Sequencing Method | Illumina |
Approximate Shotgun Coverage | 1673 |
Genome length (bp) | 60053 |
Character of genome ends | 3' Sticky Overhang |
Overhang Length | 11 bases |
Overhang Sequence | CTCGTAGGCAT |
GC Content | 66.8% |
Fasta file available? | Yes: Download fasta file |
Characterization |
Cluster | K |
Subcluster | K1 |
Cluster Life Cycle | Temperate |
Other Cluster Members |
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Annotating Institution | Unknown or unassigned |
Annotation Status | In GenBank |
Morphotype | Siphoviridae |
Number of Genes | 93 |
Number of tRNAs | 1 |
Number of tmRNAs | 0 |
Has been Phamerated? | Yes |
Gene List |
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Publication Info |
Uploaded to GenBank? | Yes |
GenBank Accession | KX641264 |
Refseq Number | None yet |
Archiving Info |
Archiving status |
Not in Pitt Archives |
Available Files |
Plaque Picture | Download |
EM Picture | Download |
Final DNAMaster File | Download |