Mycobacterium phage Ekdilam
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Detailed Information for Phage Ekdilam
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByHerivonjisoa Ando Nirina
Year Found2018
Location FoundRanomafana, Madagascar
Finding InstitutionUniversity of Pittsburgh
ProgramPhage Hunters Integrating Research and Education
From enriched soil sample?Yes
Isolation Temperature22°C
GPS Coordinates21.254409 S, 47.421769 E Map
Discovery NotesEnriched and isolated at room temperature.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedAug 16, 2018
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage293
Genome length (bp)61772
Character of genome ends3' Sticky Overhang
Overhang Length11 bases
Overhang SequenceCTCGTAGGCAT
GC Content67.4%
Fasta file available?Yes: Download fasta file
Characterization
ClusterK
SubclusterK6
Cluster Life CycleTemperate
Lysogeny NotesDoes not form mesas.
Other Cluster Members

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ActinUp (K1)

Adephagia (K1)

Adonis (K1)

AlishaPH (K1)

Amelie (K1)

Anaya (K1)

Angelica (K1)

Apocalypse (K1)

Atiba (K1)

BarrelRoll (K1)

BEEST (K1)

Beezoo (K1)

Bella96 (K1)

Belladonna (K1)

BGlluviae (K1)

Biglebops (K1)

Capricorn (K1)

Chris (K1)

CREW (K1)

CrimD (K1)

Curiosium (K1)

Dalmuri (K1)

Deby (K1)

DrHayes (K1)

Efra2 (K1)

Emerson (K1)

Enkosi (K1)

Ganymede (K1)

Geraldini (K1)

Guanica15 (K1)

HedwigODU (K1)

Homura (K1)

Hyperbowlee (K1)

Inky (K1)

JAWS (K1)

Jeckyll (K1)

Joy99 (K1)

KiSi (K1)

LastHope (K1)

LaterM (K1)

LeMond (K1)

LilPharaoh (K1)

LindNT (K1)

MarkPhew (K1)

Mdavu (K1)

Murucutumbu (K1)

Mynx (K1)

Nibb (K1)

Niklas (K1)

Nutello (K1)

Oscar (K1)

Padfoot (K1)

Peanam (K1)

Peel (K1)

Piatt (K1)

Prithvi (K1)

QuincyRose (K1)

Ramen (K1)

Rapunzel97 (K1)

SamuelLPlaqson (K1)

Scarlett (K1)

SgtBeansprout (K1)

Shaobing (K1)

Slimphazie (K1)

Spock (K1)

Sulley (K1)

Tachez (K1)

TreyKay (K1)

Twitch (K1)

Urkel (K1)

Validus (K1)

Veliki (K1)

YoureAdopted (K1)

Yunkel11 (K1)

Zavala (K1)

BoostSeason (K2)

DismalFunk (K2)

DismalStressor (K2)

Findley (K2)

Marcoliusprime (K2)

Milly (K2)

Mufasa (K2)

TM4 (K2)

ZoeJ (K2)

Hurricane (K3)

Keshu (K3)

MacnCheese (K3)

Pixie (K3)

ShedlockHolmes (K3)

TBond007 (K3)

Boilgate (K4)

Chancellor (K4)

Cheetobro (K4)

Eponine (K4)

Fionnbharth (K4)

JF1 (K4)

Juliette (K4)

Malthus (K4)

MissDaisy (K4)

Mitti (K4)

Patt (K4)

Reptar3000 (K4)

Ruthiejr (K4)

SamScheppers (K4)

Slarp (K4)

Taquito (K4)

Wintermute (K4)

AlleyCat (K5)

Collard (K5)

Edugator (K5)

Gengar (K5)

Guillsminger (K5)

Kratio (K5)

Larva (K5)

Leston (K5)

OkiRoe (K5)

Omnicron (K5)

Paola (K5)

Rando14 (K5)

Thyatira (K5)

Waterfoul (K5)

Amgine (K6)

Amohnition (K6)

Bryler (K6)

Cain (K6)

DarthP (K6)

Ekdilam (K6)

Hammy (K6)

Krueger (K6)

Marshawn (K6)

PhelpsODU (K6)

Phrank (K6)

SirPhilip (K6)

Unicorn (K6)

Ximenita (K6)

Yuna (K6)

Aminay (K7)

Annotating InstitutionUniversity of Pittsburgh
Annotation StatusIn GenBank
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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Ekdilam_1

Ekdilam_2

Ekdilam_3

Ekdilam_4

Ekdilam_5
(terminase)

Ekdilam_6
(portal protein)

Ekdilam_7
(MuF-like minor capsid protein)

Ekdilam_8

Ekdilam_9
(scaffolding protein)

Ekdilam_10
(major capsid protein)

Ekdilam_11
(head-to-tail adaptor)

Ekdilam_12
(head-to-tail stopper)

Ekdilam_13

Ekdilam_14
(tail terminator)

Ekdilam_15
(major tail protein)

Ekdilam_16
(tail assembly chaperone)

Ekdilam_17
(tail assembly chaperone)

Ekdilam_18
(tape measure protein)

Ekdilam_19
(minor tail protein)

Ekdilam_20
(minor tail protein)

Ekdilam_21

Ekdilam_22
(minor tail protein)

Ekdilam_23

Ekdilam_24
(minor tail protein)

Ekdilam_25
(minor tail protein)

Ekdilam_26

Ekdilam_27
(lysin A)

Ekdilam_28
(lysin B)

Ekdilam_29
(holin)

Ekdilam_30

Ekdilam_31

Ekdilam_32
(exonuclease)

Ekdilam_33

Ekdilam_34
(RNA polymerase sigma factor)

Ekdilam_35

Ekdilam_36

Ekdilam_37
(queuine tRNA-ribosyltransferase)

Ekdilam_38

Ekdilam_39
(integrase, (Y-int))

Ekdilam_40

Ekdilam_41
(membrane protein)

Ekdilam_42
(immunity repressor)

Ekdilam_43
(Cro (control of repressor s operator))

Ekdilam_44
(excise)

Ekdilam_45

Ekdilam_46

Ekdilam_47

Ekdilam_48

Ekdilam_49
(helix-turn-helix DNA binding domain)

Ekdilam_50
(WhiB family transcription factor)

Ekdilam_51

Ekdilam_52

Ekdilam_53

Ekdilam_54

Ekdilam_55

Ekdilam_56
(DnaE-like DNA polymerase III (alpha))

Ekdilam_57

Ekdilam_58
(Cas4 family exonuclease)

Ekdilam_59

Ekdilam_60

Ekdilam_61

Ekdilam_62

Ekdilam_63
(NrdH-like glutaredoxin)

Ekdilam_64
(HNH endonuclease)

Ekdilam_65
(DNA primase/helicase)

Ekdilam_66
(RusA-like resolvase (endonuclease))

Ekdilam_67

Ekdilam_68
(helix-turn-helix DNA binding domain)

Ekdilam_69

Ekdilam_70

Ekdilam_71

Ekdilam_72

Ekdilam_73

Ekdilam_74
(membrane protein)

Ekdilam_75

Ekdilam_76

Ekdilam_77

Ekdilam_78

Ekdilam_79
(rtcB-like RNA ligase)

Ekdilam_80

Ekdilam_81

Ekdilam_82

Ekdilam_83

Ekdilam_84
(SprT-like protease)

Ekdilam_85

Ekdilam_86

Ekdilam_87

Ekdilam_88

Ekdilam_89

Ekdilam_90

Ekdilam_91

Ekdilam_92
(HNH endonuclease)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMN234199
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 8
Pitt Freezer Box Grid# C7
Available Files
Plaque PictureDownload
EM PictureDownload
Final DNAMaster FileDownload
GenBank File for PhameratorDownload