Mycobacterium phage Ganymede
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Detailed Information for Phage Ganymede
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByAbagail Jeavons
Year Found2014
Location FoundHolland, MI USA
Finding InstitutionHope College
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates42.787808 N, 86.100969 W Map
Discovery NotesGanymede was found in moist top soil covered with mulch, between a sidewalk and a boiler room.
Naming NotesNamed for the cup-bearer of the Greek gods
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedAug 8, 2019
Sequencing FacilityHope College
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage183
Genome length (bp)59719
Character of genome ends3' Sticky Overhang
Overhang Length11 bases
Overhang SequenceCTCGTAGGCAT
GC Content66.5%
Fasta file available?Yes: Download fasta file
Characterization
ClusterK
SubclusterK1
Cluster Life CycleTemperate
Lysogeny NotesGanymede appears to be a temperate phage. It produces moderately turbid plaques and produced mesas within plaques at high concentrations of its HTL. This leads, in addition to its temperature sensitive growth, leads to the possibility of it being a K1 phage.
Other Cluster Members

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ActinUp (K1)

Adephagia (K1)

Adonis (K1)

AlishaPH (K1)

Amelie (K1)

Anaya (K1)

Angelica (K1)

Apocalypse (K1)

Asayake (K1)

Atiba (K1)

BaghaKamala (K1)

BarrelRoll (K1)

BEEST (K1)

Beezoo (K1)

Bella96 (K1)

Belladonna (K1)

BGlluviae (K1)

Biglebops (K1)

Blizzard (K1)

Boiiii (K1)

Capricorn (K1)

CaseJules (K1)

Chris (K1)

CREW (K1)

CrimD (K1)

Curiosium (K1)

Dalmuri (K1)

Deby (K1)

Devera (K1)

Dole (K1)

DrHayes (K1)

Durfee (K1)

Efra2 (K1)

Emerson (K1)

Enkosi (K1)

Ganymede (K1)

Geraldini (K1)

Guanica15 (K1)

HedwigODU (K1)

Homura (K1)

Hyperbowlee (K1)

Illumine (K1)

Inky (K1)

Jarvi (K1)

JAWS (K1)

Jeckyll (K1)

Joy99 (K1)

KiSi (K1)

LastHope (K1)

LaterM (K1)

LeMond (K1)

LilPharaoh (K1)

LindNT (K1)

MarkPhew (K1)

Mdavu (K1)

MeaningOfLife (K1)

Murucutumbu (K1)

Mynx (K1)

Nibb (K1)

Nikao (K1)

Niklas (K1)

Nutello (K1)

Oscar (K1)

Padfoot (K1)

Padpat (K1)

Peanam (K1)

Peel (K1)

Piatt (K1)

Pokerus (K1)

Prithvi (K1)

QuincyRose (K1)

Ramen (K1)

Rapunzel97 (K1)

Rosmarinus (K1)

SamuelLPlaqson (K1)

Scarlett (K1)

SgtBeansprout (K1)

Shaobing (K1)

ShiaSurprise (K1)

Slimphazie (K1)

Spock (K1)

Stinson (K1)

Sulley (K1)

Tachez (K1)

Tiri (K1)

Topper (K1)

TreyKay (K1)

Twitch (K1)

Urkel (K1)

Validus (K1)

Veliki (K1)

YoureAdopted (K1)

Yunkel11 (K1)

Zavala (K1)

BoostSeason (K2)

DismalFunk (K2)

DismalStressor (K2)

Findley (K2)

Marcoliusprime (K2)

Milly (K2)

Mufasa (K2)

TM4 (K2)

ZoeJ (K2)

Hurricane (K3)

Keshu (K3)

MacnCheese (K3)

Pixie (K3)

ShedlockHolmes (K3)

TBond007 (K3)

Boilgate (K4)

Chancellor (K4)

Cheetobro (K4)

Eponine (K4)

Fionnbharth (K4)

JF1 (K4)

Juliette (K4)

Malthus (K4)

MissDaisy (K4)

Mitti (K4)

OmniCritical (K4)

Patt (K4)

Reptar3000 (K4)

Ruthiejr (K4)

SamScheppers (K4)

Slarp (K4)

Taquito (K4)

Wintermute (K4)

AlleyCat (K5)

Collard (K5)

Edugator (K5)

Gengar (K5)

Guillsminger (K5)

InvictusManeo (K5)

Kratio (K5)

Larva (K5)

Leston (K5)

OkiRoe (K5)

Omnicron (K5)

Paola (K5)

Psycho (K5)

Rando14 (K5)

SoSeph (K5)

Thyatira (K5)

Waterfoul (K5)

Amgine (K6)

Amohnition (K6)

Bryler (K6)

Cain (K6)

DarthP (K6)

Ekdilam (K6)

Ellie (K6)

Fefferhead (K6)

Hammy (K6)

Krueger (K6)

Marshawn (K6)

PhelpsODU (K6)

Phrank (K6)

SirPhilip (K6)

Sunflower1121 (K6)

Unicorn (K6)

Ximenita (K6)

Yuna (K6)

Aminay (K7)

Annotating InstitutionUniversity of Southern California
Annotation StatusIn GenBank
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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Ganymede_1

Ganymede_2

Ganymede_3

Ganymede_4

Ganymede_6

Ganymede_7

Ganymede_8
(terminase)

Ganymede_9
(portal protein)

Ganymede_10
(MuF-like minor capsid protein)

Ganymede_11

Ganymede_12
(scaffolding protein)

Ganymede_13
(major capsid protein)

Ganymede_14
(head-to-tail adaptor)

Ganymede_15
(head-to-tail stopper)

Ganymede_16

Ganymede_17
(tail terminator)

Ganymede_19

Ganymede_20
(tail assembly chaperone)

Ganymede_21
(tail assembly chaperone)

Ganymede_22
(tape measure protein)

Ganymede_23
(minor tail protein)

Ganymede_24
(minor tail protein)

Ganymede_25

Ganymede_26
(minor tail protein)

Ganymede_27

Ganymede_28
(minor tail protein)

Ganymede_29
(minor tail protein)

Ganymede_30

Ganymede_31
(lysin A)

Ganymede_32
(lysin B)

Ganymede_33
(holin)

Ganymede_34

Ganymede_35

Ganymede_36

Ganymede_37

Ganymede_38

Ganymede_39

Ganymede_40

Ganymede_41

Ganymede_42
(tyrosine integrase)

Ganymede_43

Ganymede_44
(immunity repressor)

Ganymede_45
(helix-turn-helix DNA binding domain)

Ganymede_46
(excise)

Ganymede_47

Ganymede_48

Ganymede_49

Ganymede_50
(helix-turn-helix DNA binding domain, MerR-like)

Ganymede_51
(WhiB family transcription factor)

Ganymede_52

Ganymede_53

Ganymede_54

Ganymede_55

Ganymede_56

Ganymede_57

Ganymede_58
(DnaE-like DNA polymerase III (alpha))

Ganymede_59

Ganymede_60

Ganymede_61

Ganymede_62
(Cas4 family exonuclease)

Ganymede_63

Ganymede_64

Ganymede_65

Ganymede_66
(NrdH-like glutaredoxin)

Ganymede_67

Ganymede_68
(HNH endonuclease)

Ganymede_69
(DNA primase/helicase)

Ganymede_70
(RusA-like resolvase (endonuclease))

Ganymede_71

Ganymede_72

Ganymede_73

Ganymede_74

Ganymede_75

Ganymede_76

Ganymede_77

Ganymede_78

Ganymede_79

Ganymede_80

Ganymede_81

Ganymede_82

Ganymede_83

Ganymede_84

Ganymede_85
(rtcB-like RNA ligase)

Ganymede_86

Ganymede_87

Ganymede_88

Ganymede_89

Ganymede_90

Ganymede_91

Ganymede_92

Ganymede_93

Ganymede_94

Ganymede_95

Ganymede_96
(HNH endonuclease)

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionON081331
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Lysate Titer 5.2e10
Pitt Freezer Box# 7
Pitt Freezer Box Grid# F3
Available Files
Plaque PictureDownload
GenBank File for PhameratorDownload