Mycobacterium phage Murucutumbu
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Detailed Information for Phage Murucutumbu
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByLyanne M. Nieves
Year Found2011
Location FoundGurabo, PR USA
Finding InstitutionUniversity of Puerto Rico at Cayey
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates18.275353 N, 65.957531 W Map
Discovery NotesSample taken from front of house. The day was sunny but the soil was humid. The sample was taken by digging a few centimeters.

Naming NotesI just found it sort of musical.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 29, 2013
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIon Torrent Sequencing
Approximate Shotgun Coverage200
Sanger Finishing Reactions15
Genome length (bp)60609
Character of genome ends3' Sticky Overhang
Overhang Length11 bases
Overhang SequenceCTCGTAGGCAT
GC Content66.7%
Fasta file available?Yes: Download fasta file
Characterization
ClusterK
SubclusterK1
Cluster Life CycleTemperate
Other Cluster Members

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ActinUp (K1)

Adephagia (K1)

Adonis (K1)

AlishaPH (K1)

Amelie (K1)

Anaya (K1)

Angelica (K1)

Apocalypse (K1)

Asayake (K1)

Atiba (K1)

BaghaKamala (K1)

BarrelRoll (K1)

BEEST (K1)

Beezoo (K1)

Bella96 (K1)

Belladonna (K1)

BGlluviae (K1)

Biglebops (K1)

Blizzard (K1)

Boiiii (K1)

Capricorn (K1)

CaseJules (K1)

Chris (K1)

CREW (K1)

CrimD (K1)

Curiosium (K1)

Dalmuri (K1)

Deby (K1)

Devera (K1)

Dole (K1)

DrHayes (K1)

Durfee (K1)

Efra2 (K1)

Emerson (K1)

Enkosi (K1)

Ganymede (K1)

Geraldini (K1)

Guanica15 (K1)

HedwigODU (K1)

Homura (K1)

Hyperbowlee (K1)

Illumine (K1)

Inky (K1)

Jarvi (K1)

JAWS (K1)

Jeckyll (K1)

Joy99 (K1)

KiSi (K1)

LastHope (K1)

LaterM (K1)

LeMond (K1)

LilPharaoh (K1)

LindNT (K1)

MarkPhew (K1)

Mdavu (K1)

MeaningOfLife (K1)

Murucutumbu (K1)

Mynx (K1)

Nibb (K1)

Nikao (K1)

Niklas (K1)

Nutello (K1)

Oscar (K1)

Padfoot (K1)

Padpat (K1)

Peanam (K1)

Peel (K1)

Piatt (K1)

Pokerus (K1)

Prithvi (K1)

QuincyRose (K1)

Ramen (K1)

Rapunzel97 (K1)

SamuelLPlaqson (K1)

Scarlett (K1)

SgtBeansprout (K1)

Shaobing (K1)

ShiaSurprise (K1)

Slimphazie (K1)

Spock (K1)

Stinson (K1)

Sulley (K1)

Tachez (K1)

Tiri (K1)

TreyKay (K1)

Twitch (K1)

Urkel (K1)

Validus (K1)

Veliki (K1)

YoureAdopted (K1)

Yunkel11 (K1)

Zavala (K1)

BoostSeason (K2)

DismalFunk (K2)

DismalStressor (K2)

Findley (K2)

Marcoliusprime (K2)

Milly (K2)

Mufasa (K2)

TM4 (K2)

ZoeJ (K2)

Hurricane (K3)

Keshu (K3)

MacnCheese (K3)

Pixie (K3)

ShedlockHolmes (K3)

TBond007 (K3)

Boilgate (K4)

Chancellor (K4)

Cheetobro (K4)

Eponine (K4)

Fionnbharth (K4)

JF1 (K4)

Juliette (K4)

Malthus (K4)

MissDaisy (K4)

Mitti (K4)

Patt (K4)

Reptar3000 (K4)

Ruthiejr (K4)

SamScheppers (K4)

Slarp (K4)

Taquito (K4)

Wintermute (K4)

AlleyCat (K5)

Collard (K5)

Edugator (K5)

Gengar (K5)

Guillsminger (K5)

InvictusManeo (K5)

Kratio (K5)

Larva (K5)

Leston (K5)

OkiRoe (K5)

Omnicron (K5)

Paola (K5)

Psycho (K5)

Rando14 (K5)

SoSeph (K5)

Thyatira (K5)

Waterfoul (K5)

Amgine (K6)

Amohnition (K6)

Bryler (K6)

Cain (K6)

DarthP (K6)

Ekdilam (K6)

Ellie (K6)

Fefferhead (K6)

Hammy (K6)

Krueger (K6)

Marshawn (K6)

PhelpsODU (K6)

Phrank (K6)

SirPhilip (K6)

Unicorn (K6)

Ximenita (K6)

Yuna (K6)

Aminay (K7)

Annotating InstitutionUnknown or unassigned
Annotation StatusIn GenBank
Plaque NotesPlaques were turbid, 2 mm in diameter.
MorphotypeSiphoviridae
Number of Genes95
Number of tRNAs1
Has been Phamerated?Yes
Gene List

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Murucutumbu_1

Murucutumbu_2

Murucutumbu_3

Murucutumbu_4

Murucutumbu_6

Murucutumbu_7

Murucutumbu_8
(terminase)

Murucutumbu_9
(portal protein)

Murucutumbu_10
(MuF-like minor capsid protein)

Murucutumbu_11

Murucutumbu_12
(scaffolding protein)

Murucutumbu_13
(major capsid protein)

Murucutumbu_14
(head-to-tail adaptor)

Murucutumbu_15
(head-to-tail stopper)

Murucutumbu_16

Murucutumbu_17
(tail terminator)

Murucutumbu_18

Murucutumbu_19

Murucutumbu_20

Murucutumbu_21
(tape measure protein)

Murucutumbu_22
(minor tail protein)

Murucutumbu_23
(minor tail protein)

Murucutumbu_24

Murucutumbu_25

Murucutumbu_26

Murucutumbu_27
(minor tail protein)

Murucutumbu_28

Murucutumbu_29

Murucutumbu_30
(lysin A)

Murucutumbu_31
(lysin B)

Murucutumbu_32
(holin)

Murucutumbu_33

Murucutumbu_34

Murucutumbu_35

Murucutumbu_36

Murucutumbu_37

Murucutumbu_38

Murucutumbu_39

Murucutumbu_40
(queuine tRNA-ribosyltransferase)

Murucutumbu_41

Murucutumbu_42
(tyrosine integrase)

Murucutumbu_43

Murucutumbu_44
(immunity repressor)

Murucutumbu_45
(helix-turn-helix DNA binding protein)

Murucutumbu_46
(excise)

Murucutumbu_47

Murucutumbu_48

Murucutumbu_49

Murucutumbu_50
(MerR-like helix-turn-helix DNA binding domain protein)

Murucutumbu_51
(WhiB family transcription factor)

Murucutumbu_52

Murucutumbu_53

Murucutumbu_54

Murucutumbu_55

Murucutumbu_56

Murucutumbu_57

Murucutumbu_58
(DnaE-like DNA polymerase III)

Murucutumbu_59

Murucutumbu_60

Murucutumbu_61

Murucutumbu_62

Murucutumbu_63

Murucutumbu_64

Murucutumbu_65

Murucutumbu_66

Murucutumbu_67

Murucutumbu_68
(NrdH-like glutaredoxin)

Murucutumbu_69

Murucutumbu_70
(DNA primase/helicase)

Murucutumbu_71
(RusA-like resolvase)

Murucutumbu_72

Murucutumbu_73

Murucutumbu_74

Murucutumbu_75

Murucutumbu_76

Murucutumbu_77
(SprT-like protease)

Murucutumbu_78

Murucutumbu_79

Murucutumbu_80

Murucutumbu_81

Murucutumbu_82

Murucutumbu_83

Murucutumbu_84

Murucutumbu_85
(RtcB-like RNA ligase)

Murucutumbu_86

Murucutumbu_87

Murucutumbu_88

Murucutumbu_89

Murucutumbu_90

Murucutumbu_91

Murucutumbu_92

Murucutumbu_93

Murucutumbu_94

Murucutumbu_95

Murucutumbu_96
(HNH endonuclease)

Submitted Annotation in DNA Master FormatDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionKM677211
Refseq NumberNone yet
Published in PaperPope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity
Archiving Info
Archiving status Archived
Pitt Freezer Box# 29
Pitt Freezer Box Grid# 72