Mycobacterium phage Strobilo
Know something about this phage that we don't? Modify its data.
Detailed Information for Phage Strobilo
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByKate McAvaddy and Rachel Vemula
Year Found2023
Location FoundMays Landing, NJ United States of America
Finding InstitutionSaint Joseph's University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature37°C
GPS Coordinates39.46376 N, 74.74224 W Map
Discovery NotesThe soil was collected near a trail at Lake Lenape in Mays Landing, New Jersey. I dug around 40.6 centimeters into the ground in between a tree and a mushroom and collected the sample which was slightly sandy and wet.
Naming NotesThe soil was obtained from a spot located next to a fungus known as "Old Man of the Woods." The scientific name for this fungus is strobilomyces strobilaceus, so I named the phage "strobilo" for short.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 12, 2024
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage3287
Genome length (bp)58127
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCTCGCGGCAT
GC Content68.3%
Fasta file available?Yes: Download fasta file
Characterization
ClusterK
SubclusterK2
Cluster Life CycleTemperate
Other Cluster Members

Click to View

ActinUp (K1)

Adephagia (K1)

Adonis (K1)

Ageofdapage (K1)

AlishaPH (K1)

Amelie (K1)

Anaya (K1)

Angelica (K1)

Apocalypse (K1)

Asayake (K1)

Atiba (K1)

BaghaKamala (K1)

BarrelRoll (K1)

BEEST (K1)

Beezoo (K1)

Bella96 (K1)

Belladonna (K1)

BGlluviae (K1)

Biglebops (K1)

Blizzard (K1)

Boiiii (K1)

Capricorn (K1)

CaseJules (K1)

CheetoDust (K1)

Chris (K1)

CREW (K1)

CrimD (K1)

Curiosium (K1)

Dalmuri (K1)

Deby (K1)

Devera (K1)

Dole (K1)

DrHayes (K1)

Durfee (K1)

Efra2 (K1)

Emerson (K1)

Enkosi (K1)

Ganymede (K1)

Geraldini (K1)

Guanica15 (K1)

HedwigODU (K1)

Homura (K1)

Hyperbowlee (K1)

Illumine (K1)

Inky (K1)

Jarvi (K1)

JAWS (K1)

Jayhawk (K1)

Jeckyll (K1)

Joy99 (K1)

KiSi (K1)

LastHope (K1)

LaterM (K1)

LeMond (K1)

LilPharaoh (K1)

LindNT (K1)

Llorens (K1)

Lunahalos (K1)

MarkPhew (K1)

Mdavu (K1)

MeaningOfLife (K1)

Megsy (K1)

Murucutumbu (K1)

Mynx (K1)

Nibb (K1)

Nikao (K1)

Niklas (K1)

Nutello (K1)

Oscar (K1)

Padfoot (K1)

Padpat (K1)

Peanam (K1)

Peel (K1)

Piatt (K1)

Pokerus (K1)

Prithvi (K1)

QuincyRose (K1)

Ramen (K1)

Rapunzel97 (K1)

Rosmarinus (K1)

SamuelLPlaqson (K1)

Scarlett (K1)

SgtBeansprout (K1)

Shaobing (K1)

ShiaSurprise (K1)

Slimphazie (K1)

Spock (K1)

Stinson (K1)

Sulley (K1)

Tachez (K1)

TaiwanKao (K1)

TingHuaYa (K1)

TiniBug (K1)

Tiri (K1)

Topper (K1)

TreyKay (K1)

TruffulaTree (K1)

Twitch (K1)

Urkel (K1)

Validus (K1)

Veliki (K1)

YoureAdopted (K1)

Yunkel11 (K1)

Zabiza (K1)

Zavala (K1)

BoostSeason (K2)

DismalFunk (K2)

DismalStressor (K2)

Findley (K2)

Marcoliusprime (K2)

Milly (K2)

Mufasa (K2)

Strobilo (K2)

TM4 (K2)

ZoeJ (K2)

Hurricane (K3)

Keshu (K3)

MacnCheese (K3)

Pharb (K3)

Pixie (K3)

ShedlockHolmes (K3)

TBond007 (K3)

TribleTrouble (K3)

Chancellor (K4)

Cheetobro (K4)

Eponine (K4)

Fionnbharth (K4)

JF1 (K4)

Juliette (K4)

Malthus (K4)

MissDaisy (K4)

Mitti (K4)

OmniCritical (K4)

Patt (K4)

Reptar3000 (K4)

Ruthiejr (K4)

SamScheppers (K4)

Slarp (K4)

Taquito (K4)

Wintermute (K4)

Agent47 (K5)

AlleyCat (K5)

Collard (K5)

Dadosky (K5)

Edugator (K5)

Feyre (K5)

Gengar (K5)

Guillsminger (K5)

Heftyboy (K5)

InvictusManeo (K5)

Kratio (K5)

Larva (K5)

Leston (K5)

Miryou (K5)

OkiRoe (K5)

Omnicron (K5)

Paola (K5)

Psycho (K5)

Rando14 (K5)

SoSeph (K5)

Thyatira (K5)

Waterfoul (K5)

Amgine (K6)

Amohnition (K6)

Bryler (K6)

Cain (K6)

DarthP (K6)

Ekdilam (K6)

Ellie (K6)

Fefferhead (K6)

Hammy (K6)

Krueger (K6)

Marshawn (K6)

PhelpsODU (K6)

Phrank (K6)

Shadow1 (K6)

SirPhilip (K6)

Sunflower1121 (K6)

Syra333 (K6)

TClif (K6)

Tierra (K6)

Unicorn (K6)

Ximenita (K6)

Yuna (K6)

Aminay (K7)

Boilgate (K8)

Annotating InstitutionSaint Joseph's University
Annotation StatusIn GenBank
Plaque NotesThe plaques were turbid and typically around 2 mm. Plaques typically emerged after 48 hours.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

Click to View

Strobilo_1

Strobilo_2

Strobilo_3

Strobilo_4
(terminase)

Strobilo_5
(portal protein)

Strobilo_6

Strobilo_7

Strobilo_8
(scaffolding protein)

Strobilo_9
(major capsid protein)

Strobilo_10
(head-to-tail adaptor)

Strobilo_11
(head-to-tail stopper)

Strobilo_12

Strobilo_13
(tail terminator)

Strobilo_14
(major tail protein)

Strobilo_15
(tail assembly chaperone)

Strobilo_16
(tail assembly chaperone)

Strobilo_17
(tape measure protein)

Strobilo_18
(minor tail protein)

Strobilo_19
(minor tail protein)

Strobilo_20

Strobilo_21
(minor tail protein)

Strobilo_22

Strobilo_23
(minor tail protein)

Strobilo_24

Strobilo_25
(minor tail protein)

Strobilo_26

Strobilo_27

Strobilo_28
(lysin A)

Strobilo_29
(lysin B)

Strobilo_30
(holin)

Strobilo_31

Strobilo_32

Strobilo_33

Strobilo_34
(metallophosphatase)

Strobilo_35

Strobilo_36
(helix-turn-helix DNA binding domain)

Strobilo_37

Strobilo_38

Strobilo_39

Strobilo_40

Strobilo_41

Strobilo_42
(dpdA-like tRNA-guanine transglycosylase)

Strobilo_43
(tyrosine integrase)

Strobilo_44

Strobilo_45

Strobilo_46
(immunity repressor)

Strobilo_47
(Cro (control of repressor's operator))

Strobilo_48
(excise)

Strobilo_49

Strobilo_50

Strobilo_51

Strobilo_52

Strobilo_53

Strobilo_54
(WhiB family transcription factor)

Strobilo_55
(nucleoside deoxyribosyltransferase)

Strobilo_56

Strobilo_57

Strobilo_58

Strobilo_59

Strobilo_60

Strobilo_61
(DnaQ-like (DNA polymerase III subunit))

Strobilo_62
(hydrolase)

Strobilo_63
(Cas4 exonuclease)

Strobilo_64

Strobilo_65
(toxin in toxin/antitoxin system, HicA-like)

Strobilo_66

Strobilo_67

Strobilo_68

Strobilo_69

Strobilo_70
(NrdH-like glutaredoxin)

Strobilo_71

Strobilo_72
(HNH endonuclease)

Strobilo_73
(DNA primase/helicase)

Strobilo_74

Strobilo_75
(RusA-like resolvase)

Strobilo_76

Strobilo_77

Strobilo_78

Strobilo_79

Strobilo_80

Strobilo_81

Strobilo_82

Strobilo_83
(SprT-like protease)

Strobilo_84

Strobilo_85

Strobilo_86

Strobilo_87

Strobilo_88

Strobilo_89

Strobilo_90

Strobilo_91

Strobilo_92

Strobilo_93

Strobilo_94

Strobilo_95
(HNH endonuclease)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionPP978780
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 187
Pitt Freezer Box Grid# A2
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload