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Mycobacterium phage Jarvi
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Detailed Information for Phage Jarvi
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByChase William Pearce
Year Found2015
Location FoundNegaunee, MI USA
Finding InstitutionHope College
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature37°C
GPS Coordinates46.552967 N, 87.626722 W Map
Naming NotesNamed after Paul Jarvi, who died from cancer in 2015. This phage was located from a soil sample generously taken from his farm land.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedAug 5, 2020
Sequencing FacilityHope College
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage4159
Genome length (bp)59708
Character of genome ends3' Sticky Overhang
Overhang Length11 bases
Overhang SequenceCTCGTAGGCAT
GC Content66.5%
Fasta file available?Yes: Download fasta file
Characterization
ClusterK
SubclusterK1
Cluster Life CycleTemperate
Other Cluster Members

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ActinUp (K1)

Adephagia (K1)

Adonis (K1)

AlishaPH (K1)

Amelie (K1)

Anaya (K1)

Angelica (K1)

Apocalypse (K1)

Asayake (K1)

Atiba (K1)

BaghaKamala (K1)

BarrelRoll (K1)

BEEST (K1)

Beezoo (K1)

Bella96 (K1)

Belladonna (K1)

BGlluviae (K1)

Biglebops (K1)

Blizzard (K1)

Boiiii (K1)

Capricorn (K1)

CaseJules (K1)

Chris (K1)

CREW (K1)

CrimD (K1)

Curiosium (K1)

Dalmuri (K1)

Deby (K1)

Devera (K1)

Dole (K1)

DrHayes (K1)

Durfee (K1)

Efra2 (K1)

Emerson (K1)

Enkosi (K1)

Ganymede (K1)

Geraldini (K1)

Guanica15 (K1)

HedwigODU (K1)

Homura (K1)

Hyperbowlee (K1)

Illumine (K1)

Inky (K1)

Jarvi (K1)

JAWS (K1)

Jeckyll (K1)

Joy99 (K1)

KiSi (K1)

LastHope (K1)

LaterM (K1)

LeMond (K1)

LilPharaoh (K1)

LindNT (K1)

MarkPhew (K1)

Mdavu (K1)

MeaningOfLife (K1)

Murucutumbu (K1)

Mynx (K1)

Nibb (K1)

Nikao (K1)

Niklas (K1)

Nutello (K1)

Oscar (K1)

Padfoot (K1)

Padpat (K1)

Peanam (K1)

Peel (K1)

Piatt (K1)

Pokerus (K1)

Prithvi (K1)

QuincyRose (K1)

Ramen (K1)

Rapunzel97 (K1)

SamuelLPlaqson (K1)

Scarlett (K1)

SgtBeansprout (K1)

Shaobing (K1)

ShiaSurprise (K1)

Slimphazie (K1)

Spock (K1)

Stinson (K1)

Sulley (K1)

Tachez (K1)

Tiri (K1)

TreyKay (K1)

Twitch (K1)

Urkel (K1)

Validus (K1)

Veliki (K1)

YoureAdopted (K1)

Yunkel11 (K1)

Zavala (K1)

BoostSeason (K2)

DismalFunk (K2)

DismalStressor (K2)

Findley (K2)

Marcoliusprime (K2)

Milly (K2)

Mufasa (K2)

TM4 (K2)

ZoeJ (K2)

Hurricane (K3)

Keshu (K3)

MacnCheese (K3)

Pixie (K3)

ShedlockHolmes (K3)

TBond007 (K3)

Boilgate (K4)

Chancellor (K4)

Cheetobro (K4)

Eponine (K4)

Fionnbharth (K4)

JF1 (K4)

Juliette (K4)

Malthus (K4)

MissDaisy (K4)

Mitti (K4)

Patt (K4)

Reptar3000 (K4)

Ruthiejr (K4)

SamScheppers (K4)

Slarp (K4)

Taquito (K4)

Wintermute (K4)

AlleyCat (K5)

Collard (K5)

Edugator (K5)

Gengar (K5)

Guillsminger (K5)

InvictusManeo (K5)

Kratio (K5)

Larva (K5)

Leston (K5)

OkiRoe (K5)

Omnicron (K5)

Paola (K5)

Psycho (K5)

Rando14 (K5)

SoSeph (K5)

Thyatira (K5)

Waterfoul (K5)

Amgine (K6)

Amohnition (K6)

Bryler (K6)

Cain (K6)

DarthP (K6)

Ekdilam (K6)

Ellie (K6)

Fefferhead (K6)

Hammy (K6)

Krueger (K6)

Marshawn (K6)

PhelpsODU (K6)

Phrank (K6)

SirPhilip (K6)

Unicorn (K6)

Ximenita (K6)

Yuna (K6)

Aminay (K7)

Annotating InstitutionVirginia State University
Annotation StatusIn GenBank
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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Jarvi_1

Jarvi_2

Jarvi_3

Jarvi_4

Jarvi_6

Jarvi_7

Jarvi_8
(terminase)

Jarvi_9
(portal protein)

Jarvi_10
(MuF-like minor capsid protein)

Jarvi_11

Jarvi_12
(scaffolding protein)

Jarvi_13
(major capsid protein)

Jarvi_14
(head-to-tail adaptor)

Jarvi_15
(head-to-tail stopper)

Jarvi_16

Jarvi_17
(tail terminator)

Jarvi_18
(major tail protein)

Jarvi_19
(tail assembly chaperone)

Jarvi_20
(tail assembly chaperone)

Jarvi_21
(tape measure protein)

Jarvi_22
(minor tail protein)

Jarvi_23
(minor tail protein)

Jarvi_24
(minor tail protein)

Jarvi_25
(minor tail protein)

Jarvi_26

Jarvi_27
(minor tail protein)

Jarvi_28
(minor tail protein)

Jarvi_29

Jarvi_30
(lysin A)

Jarvi_31
(lysin B)

Jarvi_32
(holin)

Jarvi_33

Jarvi_34

Jarvi_35
(MRE11 double-strand break endo/exonuclease)

Jarvi_36
(helix-turn-helix DNA binding domain protein)

Jarvi_37

Jarvi_38

Jarvi_39

Jarvi_40

Jarvi_41
(tyrosine integrase)

Jarvi_42

Jarvi_43
(immunity repressor)

Jarvi_44
(helix-turn-helix DNA binding domain protein)

Jarvi_45
(excise)

Jarvi_46

Jarvi_47

Jarvi_48

Jarvi_49

Jarvi_50
(WhiB family transcription factor)

Jarvi_51

Jarvi_52

Jarvi_53

Jarvi_54

Jarvi_55

Jarvi_56

Jarvi_57
(DnaQ-like DNA polymerase III subunit)

Jarvi_58

Jarvi_59

Jarvi_60

Jarvi_61
(exonuclease)

Jarvi_62

Jarvi_63

Jarvi_64

Jarvi_65

Jarvi_66
(NrdH-like glutaredoxin)

Jarvi_67

Jarvi_68
(HNH endonuclease)

Jarvi_69
(DNA primase/helicase)

Jarvi_70

Jarvi_71
(RusA-like resolvase)

Jarvi_72

Jarvi_73

Jarvi_74

Jarvi_75

Jarvi_76
(SprT-like protease)

Jarvi_77

Jarvi_78

Jarvi_79

Jarvi_80

Jarvi_81

Jarvi_82

Jarvi_83

Jarvi_84

Jarvi_85
(rtcB-like RNA ligase)

Jarvi_86
(DNA binding protein)

Jarvi_87

Jarvi_88

Jarvi_89

Jarvi_90

Jarvi_91
(HicB-like antitoxin)

Jarvi_92
(HicA-like toxin)

Jarvi_93

Jarvi_94

Jarvi_95

Jarvi_96
(HNH endonuclease)

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMW862985
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 19
Pitt Freezer Box Grid# D10
Available Files
Plaque PictureDownload
GenBank File for PhameratorDownload