Mycobacterium phage Psycho
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Detailed Information for Phage Psycho
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found BySusana Gutierrez
Year Found2019
Location FoundBlacksburg, VA United States
Finding InstitutionVirginia Tech
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature37°C
GPS Coordinates37.2278 N, 80.4243 W Map
Discovery NotesThe phage was found outside of Williams Hall, on Virginia Tech's campus. The phage was collected by the sidewalk, where foot tracks were present.
Naming NotesThe phage was named "Psycho" because it was found outside of Williams Hall, which houses the Psychology Department at Virginia Tech.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 9, 2020
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1422
Genome length (bp)62110
Character of genome ends3' Sticky Overhang
Overhang Length11 bases
Overhang SequenceCTCAGTGGCAT
GC Content65.3%
Fasta file available?Yes: Download fasta file
Characterization
ClusterK
SubclusterK5
Cluster Life CycleTemperate
Other Cluster Members

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ActinUp (K1)

Adephagia (K1)

Adonis (K1)

AlishaPH (K1)

Amelie (K1)

Anaya (K1)

Angelica (K1)

Apocalypse (K1)

Asayake (K1)

Atiba (K1)

BaghaKamala (K1)

BarrelRoll (K1)

BEEST (K1)

Beezoo (K1)

Bella96 (K1)

Belladonna (K1)

BGlluviae (K1)

Biglebops (K1)

Blizzard (K1)

Boiiii (K1)

Capricorn (K1)

CaseJules (K1)

Chris (K1)

CREW (K1)

CrimD (K1)

Curiosium (K1)

Dalmuri (K1)

Deby (K1)

Devera (K1)

Dole (K1)

DrHayes (K1)

Durfee (K1)

Efra2 (K1)

Emerson (K1)

Enkosi (K1)

Ganymede (K1)

Geraldini (K1)

Guanica15 (K1)

HedwigODU (K1)

Homura (K1)

Hyperbowlee (K1)

Illumine (K1)

Inky (K1)

Jarvi (K1)

JAWS (K1)

Jeckyll (K1)

Joy99 (K1)

KiSi (K1)

LastHope (K1)

LaterM (K1)

LeMond (K1)

LilPharaoh (K1)

LindNT (K1)

MarkPhew (K1)

Mdavu (K1)

MeaningOfLife (K1)

Murucutumbu (K1)

Mynx (K1)

Nibb (K1)

Nikao (K1)

Niklas (K1)

Nutello (K1)

Oscar (K1)

Padfoot (K1)

Padpat (K1)

Peanam (K1)

Peel (K1)

Piatt (K1)

Pokerus (K1)

Prithvi (K1)

QuincyRose (K1)

Ramen (K1)

Rapunzel97 (K1)

SamuelLPlaqson (K1)

Scarlett (K1)

SgtBeansprout (K1)

Shaobing (K1)

ShiaSurprise (K1)

Slimphazie (K1)

Spock (K1)

Stinson (K1)

Sulley (K1)

Tachez (K1)

TreyKay (K1)

Twitch (K1)

Urkel (K1)

Validus (K1)

Veliki (K1)

YoureAdopted (K1)

Yunkel11 (K1)

Zavala (K1)

BoostSeason (K2)

DismalFunk (K2)

DismalStressor (K2)

Findley (K2)

Marcoliusprime (K2)

Milly (K2)

Mufasa (K2)

TM4 (K2)

ZoeJ (K2)

Hurricane (K3)

Keshu (K3)

MacnCheese (K3)

Pixie (K3)

ShedlockHolmes (K3)

TBond007 (K3)

Boilgate (K4)

Chancellor (K4)

Cheetobro (K4)

Eponine (K4)

Fionnbharth (K4)

JF1 (K4)

Juliette (K4)

Malthus (K4)

MissDaisy (K4)

Mitti (K4)

Patt (K4)

Reptar3000 (K4)

Ruthiejr (K4)

SamScheppers (K4)

Slarp (K4)

Taquito (K4)

Wintermute (K4)

AlleyCat (K5)

Collard (K5)

Edugator (K5)

Gengar (K5)

Guillsminger (K5)

InvictusManeo (K5)

Kratio (K5)

Larva (K5)

Leston (K5)

OkiRoe (K5)

Omnicron (K5)

Paola (K5)

Psycho (K5)

Rando14 (K5)

SoSeph (K5)

Thyatira (K5)

Waterfoul (K5)

Amgine (K6)

Amohnition (K6)

Bryler (K6)

Cain (K6)

DarthP (K6)

Ekdilam (K6)

Ellie (K6)

Fefferhead (K6)

Hammy (K6)

Krueger (K6)

Marshawn (K6)

PhelpsODU (K6)

Phrank (K6)

SirPhilip (K6)

Unicorn (K6)

Ximenita (K6)

Yuna (K6)

Aminay (K7)

Annotating InstitutionVirginia Tech
Annotation StatusIn GenBank
Plaque NotesThe plaques are clear and large in size.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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Psycho_1

Psycho_2

Psycho_3

Psycho_5
(terminase small subunit)

Psycho_6
(terminase large subunit)

Psycho_7
(portal protein)

Psycho_8
(capsid maturation protease)

Psycho_9

Psycho_10
(scaffolding protein)

Psycho_11
(major capsid protein)

Psycho_12
(head-to-tail adaptor)

Psycho_13
(head-to-tail stopper)

Psycho_14

Psycho_15
(tail terminator)

Psycho_16
(major tail protein)

Psycho_17
(tail assembly chaperone)

Psycho_18
(tail assembly chaperone)

Psycho_19
(tape measure protein)

Psycho_20
(minor tail protein)

Psycho_21
(minor tail protein)

Psycho_22

Psycho_23

Psycho_24
(minor tail protein)

Psycho_25

Psycho_26
(minor tail protein)

Psycho_27

Psycho_28
(minor tail protein)

Psycho_29

Psycho_30
(lysin A)

Psycho_31
(lysin B)

Psycho_32
(holin)

Psycho_33

Psycho_34

Psycho_35

Psycho_36

Psycho_37
(helix-turn-helix DNA binding domain protein)

Psycho_38
(hydrolase)

Psycho_39
(serine integrase)

Psycho_40

Psycho_41

Psycho_42
(immunity repressor)

Psycho_43
(Cro protein)

Psycho_44

Psycho_45

Psycho_46

Psycho_47

Psycho_48

Psycho_49

Psycho_50

Psycho_51

Psycho_52

Psycho_53

Psycho_54

Psycho_55
(exonuclease)

Psycho_56

Psycho_57

Psycho_58

Psycho_59

Psycho_60
(glutaredoxin)

Psycho_61
(HNH endonuclease)

Psycho_62
(HNH endonuclease)

Psycho_63
(DNA primase/polymerase)

Psycho_64
(DNA helicase)

Psycho_65
(RusA-like resolvase)

Psycho_66
(peptidase)

Psycho_67

Psycho_68

Psycho_69

Psycho_70

Psycho_71

Psycho_72

Psycho_73

Psycho_74

Psycho_75

Psycho_76
(RtcB-like RNA ligase)

Psycho_77

Psycho_78

Psycho_79

Psycho_80

Psycho_81

Psycho_82

Psycho_83

Psycho_84

Psycho_85
(queuine tRNA-ribosyltransferase)

Psycho_86

Psycho_87

Psycho_88

Psycho_89

Psycho_90

Psycho_91

Psycho_92

Psycho_93

Psycho_94

Psycho_95

Psycho_96

Psycho_97

Psycho_98
(HNH endonuclease)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMW435854
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 102
Pitt Freezer Box Grid# C4
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload