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Mycobacterium phage Ramen
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Detailed Information for Phage Ramen
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByAissa Mendez and Jacqueline Ramos
Year Found2015
Location FoundHouston, TX
Finding InstitutionUniversity of Houston-Downtown
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates29.7629 N, 95.3624 W Map
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedDec 15, 2015
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage798
Genome length (bp)59462
Character of genome ends3' Sticky Overhang
Overhang Length11 bases
Overhang SequenceCTCGTAGGCAT
GC Content66.6%
Fasta file available?Yes: Download fasta file
Characterization
ClusterK
SubclusterK1
Cluster Life CycleTemperate
Other Cluster Members

Click to View

ActinUp (K1)

Adephagia (K1)

Adonis (K1)

AlishaPH (K1)

Amelie (K1)

Anaya (K1)

Angelica (K1)

Apocalypse (K1)

Atiba (K1)

BarrelRoll (K1)

BEEST (K1)

Beezoo (K1)

Bella96 (K1)

Belladonna (K1)

BGlluviae (K1)

Biglebops (K1)

Capricorn (K1)

Chris (K1)

CREW (K1)

CrimD (K1)

Curiosium (K1)

Dalmuri (K1)

Deby (K1)

DrHayes (K1)

Efra2 (K1)

Emerson (K1)

Enkosi (K1)

Ganymede (K1)

Geraldini (K1)

Guanica15 (K1)

HedwigODU (K1)

Homura (K1)

Hyperbowlee (K1)

Inky (K1)

JAWS (K1)

Jeckyll (K1)

Joy99 (K1)

KiSi (K1)

LastHope (K1)

LaterM (K1)

LeMond (K1)

LilPharaoh (K1)

LindNT (K1)

MarkPhew (K1)

Mdavu (K1)

Murucutumbu (K1)

Mynx (K1)

Nibb (K1)

Niklas (K1)

Nutello (K1)

Oscar (K1)

Padfoot (K1)

Peanam (K1)

Peel (K1)

Piatt (K1)

Prithvi (K1)

QuincyRose (K1)

Ramen (K1)

Rapunzel97 (K1)

SamuelLPlaqson (K1)

Scarlett (K1)

SgtBeansprout (K1)

Shaobing (K1)

Slimphazie (K1)

Spock (K1)

Sulley (K1)

Tachez (K1)

TreyKay (K1)

Twitch (K1)

Urkel (K1)

Validus (K1)

Veliki (K1)

YoureAdopted (K1)

Yunkel11 (K1)

Zavala (K1)

BoostSeason (K2)

DismalFunk (K2)

DismalStressor (K2)

Findley (K2)

Marcoliusprime (K2)

Milly (K2)

Mufasa (K2)

TM4 (K2)

ZoeJ (K2)

Hurricane (K3)

Keshu (K3)

MacnCheese (K3)

Pixie (K3)

ShedlockHolmes (K3)

TBond007 (K3)

Boilgate (K4)

Chancellor (K4)

Cheetobro (K4)

Eponine (K4)

Fionnbharth (K4)

JF1 (K4)

Juliette (K4)

Malthus (K4)

MissDaisy (K4)

Mitti (K4)

Patt (K4)

Reptar3000 (K4)

Ruthiejr (K4)

SamScheppers (K4)

Slarp (K4)

Taquito (K4)

Wintermute (K4)

AlleyCat (K5)

Collard (K5)

Edugator (K5)

Gengar (K5)

Guillsminger (K5)

Kratio (K5)

Larva (K5)

Leston (K5)

OkiRoe (K5)

Omnicron (K5)

Paola (K5)

Rando14 (K5)

Thyatira (K5)

Waterfoul (K5)

Amgine (K6)

Amohnition (K6)

Bryler (K6)

Cain (K6)

DarthP (K6)

Ekdilam (K6)

Hammy (K6)

Krueger (K6)

Marshawn (K6)

PhelpsODU (K6)

Phrank (K6)

SirPhilip (K6)

Unicorn (K6)

Ximenita (K6)

Yuna (K6)

Aminay (K7)

Annotating InstitutionUniversity of Pittsburgh
Annotation StatusIn GenBank
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

Click to View

Ramen_1

Ramen_2

Ramen_3
(AAA-ATPase)

Ramen_4

Ramen_6

Ramen_7

Ramen_8
(terminase)

Ramen_9
(portal protein)

Ramen_10
(MuF-like minor capsid protein)

Ramen_11

Ramen_12
(scaffolding protein)

Ramen_13
(major capsid protein)

Ramen_14
(head-to-tail adaptor)

Ramen_15
(head-to-tail stopper)

Ramen_16

Ramen_17
(tail terminator)

Ramen_18
(major tail protein)

Ramen_19
(tail assembly chaperone)

Ramen_20
(tail assembly chaperone)

Ramen_21
(tape measure protein)

Ramen_22
(minor tail protein)

Ramen_23
(minor tail protein)

Ramen_24
(minor tail protein)

Ramen_25
(minor tail protein)

Ramen_26

Ramen_27
(minor tail protein)

Ramen_28
(minor tail protein)

Ramen_29

Ramen_30
(lysin A)

Ramen_31
(lysin B)

Ramen_32
(holin)

Ramen_33
(membrane protein)

Ramen_34

Ramen_35
(phosphodiesterase)

Ramen_36
(helix-turn-helix DNA binding domain protein)

Ramen_37

Ramen_38

Ramen_39

Ramen_40
(membrane protein)

Ramen_41
(integrase)

Ramen_42
(membrane protein)

Ramen_43
(immunity repressor)

Ramen_44
(helix-turn-helix DNA binding domain protein)

Ramen_45
(helix-turn-helix DNA binding domain protein)

Ramen_46

Ramen_47

Ramen_48
(membrane protein)

Ramen_49

Ramen_50
(helix-turn-helix DNA binding domain protein)

Ramen_51
(WhiB family transcription factor)

Ramen_52

Ramen_53

Ramen_54

Ramen_55

Ramen_56

Ramen_57

Ramen_58
(DNA polymerase III subunit)

Ramen_59

Ramen_60

Ramen_61

Ramen_62
(exonuclease)

Ramen_63

Ramen_64

Ramen_65

Ramen_66

Ramen_67
(NrdH-like glutaredoxin)

Ramen_68

Ramen_69
(HNH endonuclease)

Ramen_70
(DNA primase/helicase)

Ramen_71

Ramen_72
(RusA-like resolvase)

Ramen_73

Ramen_74
(peptidase)

Ramen_75

Ramen_76

Ramen_77
(SprT-like protease)

Ramen_78

Ramen_79

Ramen_80
(helix-turn-helix DNA binding domain protein)

Ramen_81

Ramen_82

Ramen_83

Ramen_84

Ramen_85

Ramen_86
(RtcB-like RNA ligase)

Ramen_87

Ramen_88

Ramen_89

Ramen_90

Ramen_91

Ramen_92

Ramen_93

Ramen_94

Ramen_95

Ramen_96

Ramen_97
(HNH endonuclease)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMN234197
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 25
Pitt Freezer Box Grid# D7
Available Files
Final DNAMaster FileDownload
GenBank File for PhameratorDownload