Mycobacterium phage Mdavu
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Detailed Information for Phage Mdavu
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByNOMAHLUBI RADEBE
Year Found2018
Location FoundDurban, South Africa
Finding InstitutionUniversity of Kwazulu-Natal
ProgramMycobacterial Genetics Course, Durban, South Africa
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates29.818609 S, 30.944569 E Map
Discovery NotesDiscovered at westville campus in front of M block. After a day of incubation a plate full blown of plaques was observed. The phage multiplies in large numbers, thus requires a series of dilutions.
Naming NotesNamed the phage Mdavu, after my father, DAVID.
Its his nickname
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedFeb 15, 2019
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage2310
Genome length (bp)56443
Character of genome ends3' Sticky Overhang
Overhang Length11 bases
Overhang SequenceCTCGGGGGCAT
GC Content67.1%
Fasta file available?Yes: Download fasta file
Characterization
ClusterK
SubclusterK1
Cluster Life CycleTemperate
Other Cluster Members

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ActinUp (K1)

Adephagia (K1)

Adonis (K1)

AlishaPH (K1)

Amelie (K1)

Anaya (K1)

Angelica (K1)

Apocalypse (K1)

Atiba (K1)

BarrelRoll (K1)

BEEST (K1)

Beezoo (K1)

Bella96 (K1)

Belladonna (K1)

BGlluviae (K1)

Biglebops (K1)

Capricorn (K1)

Chris (K1)

CREW (K1)

CrimD (K1)

Curiosium (K1)

Dalmuri (K1)

Deby (K1)

DrHayes (K1)

Efra2 (K1)

Emerson (K1)

Enkosi (K1)

Ganymede (K1)

Geraldini (K1)

Guanica15 (K1)

HedwigODU (K1)

Homura (K1)

Hyperbowlee (K1)

Inky (K1)

JAWS (K1)

Jeckyll (K1)

Joy99 (K1)

KiSi (K1)

LastHope (K1)

LaterM (K1)

LeMond (K1)

LilPharaoh (K1)

LindNT (K1)

MarkPhew (K1)

Mdavu (K1)

Murucutumbu (K1)

Mynx (K1)

Nibb (K1)

Niklas (K1)

Nutello (K1)

Oscar (K1)

Padfoot (K1)

Peanam (K1)

Peel (K1)

Piatt (K1)

Prithvi (K1)

QuincyRose (K1)

Ramen (K1)

Rapunzel97 (K1)

SamuelLPlaqson (K1)

Scarlett (K1)

SgtBeansprout (K1)

Shaobing (K1)

Slimphazie (K1)

Spock (K1)

Sulley (K1)

Tachez (K1)

TreyKay (K1)

Twitch (K1)

Urkel (K1)

Validus (K1)

Veliki (K1)

YoureAdopted (K1)

Yunkel11 (K1)

Zavala (K1)

BoostSeason (K2)

DismalFunk (K2)

DismalStressor (K2)

Findley (K2)

Marcoliusprime (K2)

Milly (K2)

Mufasa (K2)

TM4 (K2)

ZoeJ (K2)

Hurricane (K3)

Keshu (K3)

MacnCheese (K3)

Pixie (K3)

ShedlockHolmes (K3)

TBond007 (K3)

Boilgate (K4)

Chancellor (K4)

Cheetobro (K4)

Eponine (K4)

Fionnbharth (K4)

JF1 (K4)

Juliette (K4)

Malthus (K4)

MissDaisy (K4)

Mitti (K4)

Patt (K4)

Reptar3000 (K4)

Ruthiejr (K4)

SamScheppers (K4)

Slarp (K4)

Taquito (K4)

Wintermute (K4)

AlleyCat (K5)

Collard (K5)

Edugator (K5)

Gengar (K5)

Guillsminger (K5)

Kratio (K5)

Larva (K5)

Leston (K5)

OkiRoe (K5)

Omnicron (K5)

Paola (K5)

Rando14 (K5)

Thyatira (K5)

Waterfoul (K5)

Amgine (K6)

Amohnition (K6)

Bryler (K6)

Cain (K6)

DarthP (K6)

Ekdilam (K6)

Hammy (K6)

Krueger (K6)

Marshawn (K6)

PhelpsODU (K6)

Phrank (K6)

SirPhilip (K6)

Unicorn (K6)

Ximenita (K6)

Yuna (K6)

Aminay (K7)

Annotating InstitutionUniversity of Pittsburgh
Annotation StatusIn GenBank
Plaque Notescloudy irregular shaped plaques after 24hrs.
has titre at 10
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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Mdavu_1

Mdavu_2

Mdavu_3
(terminase, small subunit)

Mdavu_4
(terminase, large subunit)

Mdavu_5
(portal protein)

Mdavu_6
(capsid maturation protease)

Mdavu_7

Mdavu_8
(scaffolding protein)

Mdavu_9
(major capsid protein)

Mdavu_10
(head-to-tail adaptor)

Mdavu_11
(head-to-tail stopper)

Mdavu_12

Mdavu_13
(tail terminator)

Mdavu_14
(major tail protein)

Mdavu_15
(tail assembly chaperone)

Mdavu_16
(tail assembly chaperone)

Mdavu_17
(tapemeasure protein)

Mdavu_18
(minor tail protein)

Mdavu_19
(minor tail protein)

Mdavu_20

Mdavu_21
(minor tail protein)

Mdavu_22
(minor tail protein)

Mdavu_23
(minor tail protein)

Mdavu_24
(minor tail protein)

Mdavu_25

Mdavu_26
(lysin A)

Mdavu_27
(lysin B)

Mdavu_28
(holin)

Mdavu_29
(membrane protein)

Mdavu_30

Mdavu_31
(exonuclease)

Mdavu_32
(helix-turn-helix DNA binding domain)

Mdavu_33

Mdavu_34

Mdavu_35
(queuine tRNA-ribosyltransferase)

Mdavu_36
(queuine tRNA-ribosyltransferase)

Mdavu_37
(tyrosine integrase)

Mdavu_38
(membrane protein)

Mdavu_39
(immunity repressor)

Mdavu_40
(CRO protein)

Mdavu_41
(excise)

Mdavu_42

Mdavu_43

Mdavu_44
(membrane protein)

Mdavu_45

Mdavu_46
(helix-turn-helix DNA binding domain protein)

Mdavu_47
(WhiB family transcription factor)

Mdavu_48

Mdavu_49

Mdavu_50
(DnaQ-like (DNA polymerase III subunit))

Mdavu_51
(Cas4 family exonuclease)

Mdavu_52

Mdavu_53

Mdavu_54

Mdavu_55

Mdavu_56
(NrdH-like glutaredoxin)

Mdavu_57
(HNH endonuclease)

Mdavu_58
(DNA primase/helicase)

Mdavu_59
(RusA-like resolvase (endonuclease))

Mdavu_60

Mdavu_61
(helix-turn-helix DNA binding domain)

Mdavu_62

Mdavu_63

Mdavu_64

Mdavu_65

Mdavu_66
(membrane protein)

Mdavu_67
(phosphatase)

Mdavu_68
(rtcB-like RNA ligase)

Mdavu_69

Mdavu_70

Mdavu_71

Mdavu_72

Mdavu_73
(antitoxin in toxin/antitoxin system, HicB-like)

Mdavu_74
(toxin in toxin/antitoxin system, HicA-like)

Mdavu_75

Mdavu_76
(ssDNA binding protein)

Mdavu_77

Mdavu_78
(HNH endonuclease)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMN586025
Refseq NumberNone yet
Archiving Info
Archiving status Not in Pitt Archives
Available Files
Plaque PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload