Mycobacterium phage Ruthiejr
Know something about this phage that we don't? Modify its data.
Detailed Information for Phage Ruthiejr
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByJennifer LaRoche
Year Found2008
Location FoundHolland, MI USA
Finding InstitutionHope College
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature37°C
GPS Coordinates42.7842 N, 86.09175 W Map
Discovery NotesFrom topsoil in a rural area, on the bank of a swampy pond, next to a walking bridge. 76° F

-Two different plaque morphologies were found (A and B)
-A had a diameter of 2mm
-B had a diameter of 7mm
-Plaque A (2008HOPEruthiejrJRL) was followed up
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedAug 9, 2019
Sequencing FacilityHope College
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage401
Genome length (bp)57858
Character of genome ends3' Sticky Overhang
Overhang Length11 bases
Overhang SequenceCTCGCGGCCAT
GC Content67.4%
Fasta file available?Yes: Download fasta file
Characterization
ClusterK
SubclusterK4
Cluster Life CycleTemperate
Other Cluster Members

Click to View

ActinUp (K1)

Adephagia (K1)

Adonis (K1)

AlishaPH (K1)

Amelie (K1)

Anaya (K1)

Angelica (K1)

Apocalypse (K1)

Asayake (K1)

Atiba (K1)

BaghaKamala (K1)

BarrelRoll (K1)

BEEST (K1)

Beezoo (K1)

Bella96 (K1)

Belladonna (K1)

BGlluviae (K1)

Biglebops (K1)

Blizzard (K1)

Boiiii (K1)

Capricorn (K1)

CaseJules (K1)

Chris (K1)

CREW (K1)

CrimD (K1)

Curiosium (K1)

Dalmuri (K1)

Deby (K1)

Devera (K1)

Dole (K1)

DrHayes (K1)

Durfee (K1)

Efra2 (K1)

Emerson (K1)

Enkosi (K1)

Ganymede (K1)

Geraldini (K1)

Guanica15 (K1)

HedwigODU (K1)

Homura (K1)

Hyperbowlee (K1)

Illumine (K1)

Inky (K1)

Jarvi (K1)

JAWS (K1)

Jeckyll (K1)

Joy99 (K1)

KiSi (K1)

LastHope (K1)

LaterM (K1)

LeMond (K1)

LilPharaoh (K1)

LindNT (K1)

MarkPhew (K1)

Mdavu (K1)

MeaningOfLife (K1)

Murucutumbu (K1)

Mynx (K1)

Nibb (K1)

Niklas (K1)

Nutello (K1)

Oscar (K1)

Padfoot (K1)

Padpat (K1)

Peanam (K1)

Peel (K1)

Piatt (K1)

Pokerus (K1)

Prithvi (K1)

QuincyRose (K1)

Ramen (K1)

Rapunzel97 (K1)

SamuelLPlaqson (K1)

Scarlett (K1)

SgtBeansprout (K1)

Shaobing (K1)

ShiaSurprise (K1)

Slimphazie (K1)

Spock (K1)

Stinson (K1)

Sulley (K1)

Tachez (K1)

TreyKay (K1)

Twitch (K1)

Urkel (K1)

Validus (K1)

Veliki (K1)

YoureAdopted (K1)

Yunkel11 (K1)

Zavala (K1)

BoostSeason (K2)

DismalFunk (K2)

DismalStressor (K2)

Findley (K2)

Marcoliusprime (K2)

Milly (K2)

Mufasa (K2)

TM4 (K2)

ZoeJ (K2)

Hurricane (K3)

Keshu (K3)

MacnCheese (K3)

Pixie (K3)

ShedlockHolmes (K3)

TBond007 (K3)

Boilgate (K4)

Chancellor (K4)

Cheetobro (K4)

Eponine (K4)

Fionnbharth (K4)

JF1 (K4)

Juliette (K4)

Malthus (K4)

MissDaisy (K4)

Mitti (K4)

Patt (K4)

Reptar3000 (K4)

Ruthiejr (K4)

SamScheppers (K4)

Slarp (K4)

Taquito (K4)

Wintermute (K4)

AlleyCat (K5)

Collard (K5)

Edugator (K5)

Gengar (K5)

Guillsminger (K5)

InvictusManeo (K5)

Kratio (K5)

Larva (K5)

Leston (K5)

OkiRoe (K5)

Omnicron (K5)

Paola (K5)

Psycho (K5)

Rando14 (K5)

Thyatira (K5)

Waterfoul (K5)

Amgine (K6)

Amohnition (K6)

Bryler (K6)

Cain (K6)

DarthP (K6)

Ekdilam (K6)

Ellie (K6)

Fefferhead (K6)

Hammy (K6)

Krueger (K6)

Marshawn (K6)

PhelpsODU (K6)

Phrank (K6)

SirPhilip (K6)

Unicorn (K6)

Ximenita (K6)

Yuna (K6)

Aminay (K7)

Annotating InstitutionHope College
Annotation StatusBeing Annotated (Expected completion by 12/18/2020)
Plaque Notes-bulls eye (haloed)
-2-3mm in diameter
-incubation time: checked at 24 and 48 hours
-incubated at 37˚ C
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

Click to View

Ruthiejr_Draft_1

Ruthiejr_Draft_2

Ruthiejr_Draft_3

Ruthiejr_Draft_4

Ruthiejr_Draft_5

Ruthiejr_Draft_6

Ruthiejr_Draft_7

Ruthiejr_Draft_8

Ruthiejr_Draft_9

Ruthiejr_Draft_10

Ruthiejr_Draft_11

Ruthiejr_Draft_12

Ruthiejr_Draft_13

Ruthiejr_Draft_14

Ruthiejr_Draft_15

Ruthiejr_Draft_16

Ruthiejr_Draft_17

Ruthiejr_Draft_18

Ruthiejr_Draft_19

Ruthiejr_Draft_20

Ruthiejr_Draft_21

Ruthiejr_Draft_22

Ruthiejr_Draft_23

Ruthiejr_Draft_24

Ruthiejr_Draft_25

Ruthiejr_Draft_26

Ruthiejr_Draft_27

Ruthiejr_Draft_28

Ruthiejr_Draft_29

Ruthiejr_Draft_30

Ruthiejr_Draft_31

Ruthiejr_Draft_32

Ruthiejr_Draft_33

Ruthiejr_Draft_34

Ruthiejr_Draft_35

Ruthiejr_Draft_36

Ruthiejr_Draft_37

Ruthiejr_Draft_38

Ruthiejr_Draft_40

Ruthiejr_Draft_41

Ruthiejr_Draft_42

Ruthiejr_Draft_43

Ruthiejr_Draft_44

Ruthiejr_Draft_45

Ruthiejr_Draft_46

Ruthiejr_Draft_47

Ruthiejr_Draft_48

Ruthiejr_Draft_49

Ruthiejr_Draft_50

Ruthiejr_Draft_51

Ruthiejr_Draft_52

Ruthiejr_Draft_53

Ruthiejr_Draft_54

Ruthiejr_Draft_55

Ruthiejr_Draft_56

Ruthiejr_Draft_57

Ruthiejr_Draft_58

Ruthiejr_Draft_59

Ruthiejr_Draft_60

Ruthiejr_Draft_61

Ruthiejr_Draft_62

Ruthiejr_Draft_63

Ruthiejr_Draft_64

Ruthiejr_Draft_65

Ruthiejr_Draft_66

Ruthiejr_Draft_67

Ruthiejr_Draft_68

Ruthiejr_Draft_69

Ruthiejr_Draft_70

Ruthiejr_Draft_71

Ruthiejr_Draft_72

Ruthiejr_Draft_73

Ruthiejr_Draft_74

Ruthiejr_Draft_75

Ruthiejr_Draft_76

Ruthiejr_Draft_77

Ruthiejr_Draft_78

Ruthiejr_Draft_79

Ruthiejr_Draft_80

Ruthiejr_Draft_81

Ruthiejr_Draft_82

Ruthiejr_Draft_83

Ruthiejr_Draft_84

Ruthiejr_Draft_85

Ruthiejr_Draft_86

Ruthiejr_Draft_87

Ruthiejr_Draft_88

Ruthiejr_Draft_89

Ruthiejr_Draft_90

Ruthiejr_Draft_91

Ruthiejr_Draft_92

Ruthiejr_Draft_93

Ruthiejr_Draft_94

Ruthiejr_Draft_95

Ruthiejr_Draft_96

Ruthiejr_Draft_97

Ruthiejr_Draft_98

Publication Info
Uploaded to GenBank?No
GenBank AccessionNone yet
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Designator 2008HOPEruthiejrJRL
SEA Lysate Titer 6.4e9
Pitt Freezer Box# 3
Pitt Freezer Box Grid# 62
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload