The Actinobacteriophage Database

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Detailed Information for Phage JF1
Discovery Information
Isolation Host	Mycobacterium smegmatis ATCC 607
Verified to infect	Mycobacterium smegmatis ATCC 607 Mycobacterium smegmatis mc²155
Found By	JT Crawford
Year Found	1981
Location Found	AR USA
Program	Unavailable
From enriched soil sample?	Yes
Isolation Temperature	37°C
GPS Coordinates	Unavailable
Discovery Notes	Isolated on unspecified host from barnyard soil. Phage was used for typing M. avium strains
Sequencing Information
Sequencing Complete?	Yes
Date Sequencing Completed	May 14, 2019
Sequencing Facility	Pittsburgh Bacteriophage Institute
Shotgun Sequencing Method	Illumina
Approximate Shotgun Coverage	3213
Genome length (bp)	57990
Character of genome ends	3' Sticky Overhang
Overhang Length	11 bases
Overhang Sequence	CTCGCGGCCAT
GC Content	67.9%
Fasta file available?	Available upon entering GPS coordinates
Characterization
Cluster	K
Subcluster	K4
Cluster Life Cycle	Temperate
Other Cluster Members	Click to View ActinUp (K1) Adephagia (K1) Adonis (K1) Ageofdapage (K1) AlishaPH (K1) Amelie (K1) Anaya (K1) Angelica (K1) Apocalypse (K1) Asayake (K1) Atiba (K1) BaghaKamala (K1) BarrelRoll (K1) BEEST (K1) Beezoo (K1) Bella96 (K1) Belladonna (K1) BGlluviae (K1) Biglebops (K1) Blizzard (K1) Boiiii (K1) Capricorn (K1) CaseJules (K1) CheetoDust (K1) Chris (K1) Clipper (K1) CREW (K1) CrimD (K1) Curiosium (K1) Dalmuri (K1) Dartin (K1) Deby (K1) Devera (K1) Dole (K1) DrHayes (K1) Durfee (K1) Efra2 (K1) Emerson (K1) Enkosi (K1) Ganymede (K1) Geraldini (K1) Guanica15 (K1) HedwigODU (K1) Homura (K1) Hyperbowlee (K1) Illumine (K1) Inky (K1) Jarvi (K1) JAWS (K1) Jayhawk (K1) Jeckyll (K1) Joy99 (K1) KiSi (K1) LastHope (K1) LaterM (K1) LeMond (K1) LilPharaoh (K1) LindNT (K1) Llorens (K1) Lunahalos (K1) MacKat (K1) MarkPhew (K1) McMater (K1) Mdavu (K1) MeaningOfLife (K1) Megsy (K1) Murucutumbu (K1) Mynx (K1) Nibb (K1) Nikao (K1) Niklas (K1) Nutello (K1) Oscar (K1) Padfoot (K1) Padpat (K1) Peanam (K1) Peel (K1) Piatt (K1) Pokerus (K1) Prithvi (K1) QuincyRose (K1) Ramen (K1) Rapunzel97 (K1) Richo (K1) Rosmarinus (K1) SamuelLPlaqson (K1) Scarlett (K1) SgtBeansprout (K1) Shaobing (K1) ShiaSurprise (K1) Slimphazie (K1) Spock (K1) Stinson (K1) Sulley (K1) Tachez (K1) TaiwanKao (K1) TingHuaYa (K1) TiniBug (K1) Tiri (K1) Topper (K1) Torres (K1) TreyKay (K1) TruffulaTree (K1) Twitch (K1) Urkel (K1) Validus (K1) Veliki (K1) YoureAdopted (K1) Yunkel11 (K1) Zabiza (K1) Zavala (K1) BoostSeason (K2) DismalFunk (K2) DismalStressor (K2) Findley (K2) Marcoliusprime (K2) Milly (K2) Mufasa (K2) Strobilo (K2) TM4 (K2) ZoeJ (K2) Hurricane (K3) Keshu (K3) MacnCheese (K3) Pharb (K3) Pixie (K3) ShedlockHolmes (K3) TBond007 (K3) TribleTrouble (K3) Chancellor (K4) Cheetobro (K4) Eponine (K4) Fionnbharth (K4) JF1 (K4) Juliette (K4) Kraw (K4) Malthus (K4) MissDaisy (K4) Mitti (K4) OmniCritical (K4) Patt (K4) Reptar3000 (K4) Ruthiejr (K4) SamScheppers (K4) Slarp (K4) Taquito (K4) Wintermute (K4) Agent47 (K5) AlleyCat (K5) Collard (K5) Dadosky (K5) Edugator (K5) Feyre (K5) Gengar (K5) Guillsminger (K5) Heftyboy (K5) InvictusManeo (K5) Kratio (K5) Larva (K5) Leston (K5) Miryou (K5) OkiRoe (K5) Omnicron (K5) Paola (K5) Psycho (K5) Rando14 (K5) SoSeph (K5) Thyatira (K5) Waterfoul (K5) Amgine (K6) Amohnition (K6) Bryler (K6) Cain (K6) DarthP (K6) Ekdilam (K6) Ellie (K6) Fefferhead (K6) Hammy (K6) Krueger (K6) Marshawn (K6) November (K6) PhelpsODU (K6) Phrank (K6) Shadow1 (K6) SirPhilip (K6) Sunflower1121 (K6) Syra333 (K6) TClif (K6) Tierra (K6) Unicorn (K6) Ximenita (K6) Yuna (K6) Aminay (K7) Boilgate (K8)
Annotating Institution	University of Pittsburgh
Annotation Status	In GenBank
Morphotype	Siphoviridae
Number of Genes	94
Number of tRNAs	1
Number of tmRNAs	0
Has been Phamerated?	Yes
Gene List	Click to View JF1_1 JF1_2 JF1_3 JF1_4 JF1_5 JF1_6 JF1_7 JF1_8 JF1_9 (terminase) JF1_10 (portal protein) JF1_11 (MuF-like minor capsid protein) JF1_12 JF1_13 (scaffolding protein) JF1_14 (major capsid protein) JF1_15 (head-to-tail adaptor) JF1_16 (head-to-tail stopper) JF1_17 JF1_18 (tail terminator) JF1_19 (major tail protein) JF1_20 (tail assembly chaperone) JF1_21 (tail assembly chaperone) JF1_22 (tape measure protein) JF1_23 (minor tail protein) JF1_24 (minor tail protein) JF1_25 JF1_26 (minor tail protein) JF1_27 JF1_28 (minor tail protein) JF1_29 (minor tail protein) JF1_30 JF1_31 (lysin A) JF1_32 (lysin B) JF1_33 (holin) JF1_34 JF1_35 JF1_36 (MRE11 double-strand break endo/exonuclease) JF1_37 JF1_38 — tRNA JF1_39 (LamD-like) JF1_40 JF1_41 JF1_42 JF1_43 JF1_44 JF1_45 (tyrosine integrase) JF1_46 JF1_47 (immunity repressor) JF1_48 (Cro protein) JF1_49 (excise) JF1_50 JF1_51 JF1_52 JF1_53 JF1_54 JF1_55 JF1_56 JF1_57 JF1_58 JF1_59 (HicA-like toxin) JF1_60 JF1_61 JF1_62 (DnaQ-like DNA polymerase III subunit) JF1_63 JF1_64 (Cas4 family exonuclease) JF1_65 JF1_66 JF1_67 JF1_68 JF1_69 JF1_70 (NrdH-like glutaredoxin) JF1_71 (methyltransferase) JF1_72 JF1_73 (HNH endonuclease) JF1_74 (DNA primase) JF1_75 JF1_76 (HNH endonuclease) JF1_77 JF1_78 JF1_79 JF1_80 JF1_81 (SprT-like protease) JF1_82 JF1_83 JF1_84 JF1_85 JF1_86 JF1_87 JF1_88 JF1_89 JF1_90 JF1_91 JF1_92 JF1_93 JF1_94 (HNH endonuclease) JF1_95 (methyltransferase)
Submitted Minimal DNA Master File	Download
Publication Info
Uploaded to GenBank?	Yes
GenBank Accession	MT310882
Refseq Number	None yet
Published in Paper	Crawford JT, Fitzhugh JK, Bates JH 1981, The American review of respiratory disease: Phage typing of the Mycobacterium avium-intracellulare-scrofulaceum complex.
Archiving Info
Archiving status	Archived
Available Files
GenBank File for Phamerator	Download

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